Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9769 | 5' | -59.7 | NC_002577.1 | + | 759 | 0.71 | 0.502206 |
Target: 5'- gACUCG-CAGCcgauuCCgagaggACCGGGAGCGCa -3' miRNA: 3'- -UGGGCuGUCGu----GGa-----UGGUCCUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 1410 | 0.7 | 0.521156 |
Target: 5'- -gCCGACGGCuucaGCCcgggucgggGCUAGGAGCGCc -3' miRNA: 3'- ugGGCUGUCG----UGGa--------UGGUCCUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 3036 | 0.66 | 0.783358 |
Target: 5'- cGCUCcGCAGCGCCUucgucCCGGaguaGAGCGCc -3' miRNA: 3'- -UGGGcUGUCGUGGAu----GGUC----CUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 3300 | 0.69 | 0.619143 |
Target: 5'- uCUCGAucucaggcagcaCGGCACCgauCCGGaGAGCGCGu -3' miRNA: 3'- uGGGCU------------GUCGUGGau-GGUC-CUCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 8237 | 0.67 | 0.737071 |
Target: 5'- cGCCCGcCAGCcucuCCgGCCcGGAGCGg- -3' miRNA: 3'- -UGGGCuGUCGu---GGaUGGuCCUCGCgc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 11756 | 0.66 | 0.783358 |
Target: 5'- cGCCgGAgGGCGCggACC-GG-GCGCGg -3' miRNA: 3'- -UGGgCUgUCGUGgaUGGuCCuCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 12107 | 0.68 | 0.629099 |
Target: 5'- cGCUCGGC-GCGCCggAgCAGGcGCGCGu -3' miRNA: 3'- -UGGGCUGuCGUGGa-UgGUCCuCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 37628 | 0.73 | 0.363865 |
Target: 5'- -aCCGAuaCAGguCCUACUAGGAGCGaCGu -3' miRNA: 3'- ugGGCU--GUCguGGAUGGUCCUCGC-GC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 42401 | 0.67 | 0.72752 |
Target: 5'- uCCCaaaacuACAGCACUcauucgACCGGGuAGCGCGc -3' miRNA: 3'- uGGGc-----UGUCGUGGa-----UGGUCC-UCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 44545 | 0.66 | 0.746536 |
Target: 5'- aACCCGACgAGgaGCCUcCCcuGGGCGCa -3' miRNA: 3'- -UGGGCUG-UCg-UGGAuGGucCUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 53163 | 0.71 | 0.481718 |
Target: 5'- uGCCCGACgaaaccgAGCACCUgaagcgccuaucgGCCAGGAacagaGCGgGg -3' miRNA: 3'- -UGGGCUG-------UCGUGGA-------------UGGUCCU-----CGCgC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 86317 | 0.69 | 0.579477 |
Target: 5'- gAUCUGACGGCcaaGCCUACCAcGGAcgauGCGUa -3' miRNA: 3'- -UGGGCUGUCG---UGGAUGGU-CCU----CGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 103745 | 0.66 | 0.774324 |
Target: 5'- uGCCUGGggagauuggaauCAGCuuCUuauggUACCGGGGGCGCGc -3' miRNA: 3'- -UGGGCU------------GUCGu-GG-----AUGGUCCUCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 114659 | 0.67 | 0.717892 |
Target: 5'- cGCCCGaACAGgGCa-AUCuGGAGCGCu -3' miRNA: 3'- -UGGGC-UGUCgUGgaUGGuCCUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 121591 | 0.68 | 0.629099 |
Target: 5'- cGCUCGGC-GCGCCggAgCAGGcGCGCGu -3' miRNA: 3'- -UGGGCUGuCGUGGa-UgGUCCuCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 121858 | 0.66 | 0.783358 |
Target: 5'- cGCCgGAgGGCGCggACC-GG-GCGCGg -3' miRNA: 3'- -UGGgCUgUCGUGgaUGGuCCuCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 125377 | 0.67 | 0.737071 |
Target: 5'- cGCCCGcCAGCcucuCCgGCCcGGAGCGg- -3' miRNA: 3'- -UGGGCuGUCGu---GGaUGGuCCUCGCgc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 130314 | 0.69 | 0.619143 |
Target: 5'- uCUCGAucucaggcagcaCGGCACCgauCCGGaGAGCGCGu -3' miRNA: 3'- uGGGCU------------GUCGUGGau-GGUC-CUCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 130577 | 0.66 | 0.783358 |
Target: 5'- cGCUCcGCAGCGCCUucgucCCGGaguaGAGCGCc -3' miRNA: 3'- -UGGGcUGUCGUGGAu----GGUC----CUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 132204 | 0.7 | 0.521156 |
Target: 5'- -gCCGACGGCuucaGCCcgggucgggGCUAGGAGCGCc -3' miRNA: 3'- ugGGCUGUCG----UGGa--------UGGUCCUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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