Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9769 | 5' | -59.7 | NC_002577.1 | + | 142435 | 1.09 | 0.001454 |
Target: 5'- gACCCGACAGCACCUACCAGGAGCGCGg -3' miRNA: 3'- -UGGGCUGUCGUGGAUGGUCCUCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 157793 | 0.66 | 0.774324 |
Target: 5'- uUCCGGCGugcGCGCCgccGCCGGGcGCGgGu -3' miRNA: 3'- uGGGCUGU---CGUGGa--UGGUCCuCGCgC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 155319 | 0.66 | 0.783358 |
Target: 5'- -aCCGcACAGuCGCUcg-CAGGAGCGCGu -3' miRNA: 3'- ugGGC-UGUC-GUGGaugGUCCUCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 11756 | 0.66 | 0.783358 |
Target: 5'- cGCCgGAgGGCGCggACC-GG-GCGCGg -3' miRNA: 3'- -UGGgCUgUCGUGgaUGGuCCuCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 160132 | 0.71 | 0.474368 |
Target: 5'- gGCCCGACGGCugCaacGCguGGcGCGCc -3' miRNA: 3'- -UGGGCUGUCGugGa--UGguCCuCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 759 | 0.71 | 0.502206 |
Target: 5'- gACUCG-CAGCcgauuCCgagaggACCGGGAGCGCa -3' miRNA: 3'- -UGGGCuGUCGu----GGa-----UGGUCCUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 132204 | 0.7 | 0.521156 |
Target: 5'- -gCCGACGGCuucaGCCcgggucgggGCUAGGAGCGCc -3' miRNA: 3'- ugGGCUGUCG----UGGa--------UGGUCCUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 134539 | 0.7 | 0.529774 |
Target: 5'- cCCCGACGGCggucugcccgggaACCgaaACCGcGGGCGCGg -3' miRNA: 3'- uGGGCUGUCG-------------UGGa--UGGUcCUCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 121591 | 0.68 | 0.629099 |
Target: 5'- cGCUCGGC-GCGCCggAgCAGGcGCGCGu -3' miRNA: 3'- -UGGGCUGuCGUGGa-UgGUCCuCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 160994 | 0.66 | 0.765171 |
Target: 5'- cACUCGcCAaccGCcucuGCCUACCGGaGAGCGCc -3' miRNA: 3'- -UGGGCuGU---CG----UGGAUGGUC-CUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 42401 | 0.67 | 0.72752 |
Target: 5'- uCCCaaaacuACAGCACUcauucgACCGGGuAGCGCGc -3' miRNA: 3'- uGGGc-----UGUCGUGGa-----UGGUCC-UCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 3300 | 0.69 | 0.619143 |
Target: 5'- uCUCGAucucaggcagcaCGGCACCgauCCGGaGAGCGCGu -3' miRNA: 3'- uGGGCU------------GUCGUGGau-GGUC-CUCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 156919 | 0.76 | 0.248355 |
Target: 5'- uUCCGAgGGCggggGCCcccgUACCAGGGGCGCGg -3' miRNA: 3'- uGGGCUgUCG----UGG----AUGGUCCUCGCGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 162328 | 0.67 | 0.737071 |
Target: 5'- gACCgcgcggCGACAGCGCCUagaagacccgugGCCuguacgaggaggAGGAGCgGCGg -3' miRNA: 3'- -UGG------GCUGUCGUGGA------------UGG------------UCCUCG-CGC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 37628 | 0.73 | 0.363865 |
Target: 5'- -aCCGAuaCAGguCCUACUAGGAGCGaCGu -3' miRNA: 3'- ugGGCU--GUCguGGAUGGUCCUCGC-GC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 141357 | 0.7 | 0.558855 |
Target: 5'- gACgCCGGCAGCACUgGCgauccgcuccuuaCAGGGGCGUa -3' miRNA: 3'- -UG-GGCUGUCGUGGaUG-------------GUCCUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 125377 | 0.67 | 0.737071 |
Target: 5'- cGCCCGcCAGCcucuCCgGCCcGGAGCGg- -3' miRNA: 3'- -UGGGCuGUCGu---GGaUGGuCCUCGCgc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 3036 | 0.66 | 0.783358 |
Target: 5'- cGCUCcGCAGCGCCUucgucCCGGaguaGAGCGCc -3' miRNA: 3'- -UGGGcUGUCGUGGAu----GGUC----CUCGCGc -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 138170 | 0.71 | 0.456245 |
Target: 5'- gGCCCGAacCAGCACCgGCCGGccGGCGgGg -3' miRNA: 3'- -UGGGCU--GUCGUGGaUGGUCc-UCGCgC- -5' |
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9769 | 5' | -59.7 | NC_002577.1 | + | 156146 | 0.7 | 0.511645 |
Target: 5'- cCCCGACGGCGCgcAUCAGGGGUcuccugGCGa -3' miRNA: 3'- uGGGCUGUCGUGgaUGGUCCUCG------CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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