miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9772 5' -61.8 NC_002577.1 + 10966 0.66 0.680669
Target:  5'- aCGGCUCgCGuUCGCGGGgGucGCCgacggGUg -3'
miRNA:   3'- cGCCGAGgGC-AGCGCCCgU--CGGaa---CG- -5'
9772 5' -61.8 NC_002577.1 + 122648 0.66 0.680669
Target:  5'- aCGGCUCgCGuUCGCGGGgGucGCCgacggGUg -3'
miRNA:   3'- cGCCGAGgGC-AGCGCCCgU--CGGaa---CG- -5'
9772 5' -61.8 NC_002577.1 + 153769 0.66 0.679701
Target:  5'- -gGGC-CCCGuUUGCcuaaacgGGGCAGCUUcGCg -3'
miRNA:   3'- cgCCGaGGGC-AGCG-------CCCGUCGGAaCG- -5'
9772 5' -61.8 NC_002577.1 + 163216 0.66 0.651497
Target:  5'- uGCGGCUCggccuacuggCCG-CGCGGaGCcGCCg-GCg -3'
miRNA:   3'- -CGCCGAG----------GGCaGCGCC-CGuCGGaaCG- -5'
9772 5' -61.8 NC_002577.1 + 161492 0.66 0.651497
Target:  5'- -aGGUUaugaCCGUCGUagcuagaucgGGGCGGCCagGCc -3'
miRNA:   3'- cgCCGAg---GGCAGCG----------CCCGUCGGaaCG- -5'
9772 5' -61.8 NC_002577.1 + 134112 0.66 0.651497
Target:  5'- uGCGGCUCggccuacuggCCG-CGCGGaGCcGCCg-GCg -3'
miRNA:   3'- -CGCCGAG----------GGCaGCGCC-CGuCGGaaCG- -5'
9772 5' -61.8 NC_002577.1 + 134546 0.67 0.612437
Target:  5'- gGCGGUcugCCCGggaaccgaaacCGCGGGCgcggAGCCgugGCc -3'
miRNA:   3'- -CGCCGa--GGGCa----------GCGCCCG----UCGGaa-CG- -5'
9772 5' -61.8 NC_002577.1 + 53380 0.67 0.612437
Target:  5'- aCGGguaCUCCCGUCGCaGaGUGGCUcgGCa -3'
miRNA:   3'- cGCC---GAGGGCAGCGcC-CGUCGGaaCG- -5'
9772 5' -61.8 NC_002577.1 + 162782 0.67 0.612437
Target:  5'- gGCGGUcugCCCGggaaccgaaacCGCGGGCgcggAGCCgugGCc -3'
miRNA:   3'- -CGCCGa--GGGCa----------GCGCCCG----UCGGaa-CG- -5'
9772 5' -61.8 NC_002577.1 + 26438 0.67 0.611462
Target:  5'- uGgGGUUUCCGgcccgaccugcguUUGCGGGCcaaguuaagaaAGCCUUGUc -3'
miRNA:   3'- -CgCCGAGGGC-------------AGCGCCCG-----------UCGGAACG- -5'
9772 5' -61.8 NC_002577.1 + 9330 0.67 0.602689
Target:  5'- -aGGCUggCCCGgggCGCGGacGCGGUCUgaggGCu -3'
miRNA:   3'- cgCCGA--GGGCa--GCGCC--CGUCGGAa---CG- -5'
9772 5' -61.8 NC_002577.1 + 124284 0.67 0.602689
Target:  5'- -aGGCUggCCCGgggCGCGGacGCGGUCUgaggGCu -3'
miRNA:   3'- cgCCGA--GGGCa--GCGCC--CGUCGGAa---CG- -5'
9772 5' -61.8 NC_002577.1 + 4451 0.68 0.563956
Target:  5'- cGCGGCcaUCCCugcagCGCGGccCGGCCUcguUGCg -3'
miRNA:   3'- -CGCCG--AGGGca---GCGCCc-GUCGGA---ACG- -5'
9772 5' -61.8 NC_002577.1 + 129163 0.68 0.563956
Target:  5'- cGCGGCcaUCCCugcagCGCGGccCGGCCUcguUGCg -3'
miRNA:   3'- -CGCCG--AGGGca---GCGCCc-GUCGGA---ACG- -5'
9772 5' -61.8 NC_002577.1 + 122557 0.68 0.535341
Target:  5'- gGCGGCguuucuagccCCCGgCGCGGGCcgcGGCCg--- -3'
miRNA:   3'- -CGCCGa---------GGGCaGCGCCCG---UCGGaacg -5'
9772 5' -61.8 NC_002577.1 + 159050 0.68 0.535341
Target:  5'- cGCGGCcgCgCCGUccucCGCGGccGCGGCCgcgGCc -3'
miRNA:   3'- -CGCCGa-G-GGCA----GCGCC--CGUCGGaa-CG- -5'
9772 5' -61.8 NC_002577.1 + 11056 0.68 0.535341
Target:  5'- gGCGGCguuucuagccCCCGgCGCGGGCcgcGGCCg--- -3'
miRNA:   3'- -CGCCGa---------GGGCaGCGCCCG---UCGGaacg -5'
9772 5' -61.8 NC_002577.1 + 138288 0.68 0.535341
Target:  5'- cGCGGCcgCgCCGUccucCGCGGccGCGGCCgcgGCc -3'
miRNA:   3'- -CGCCGa-G-GGCA----GCGCC--CGUCGGaa-CG- -5'
9772 5' -61.8 NC_002577.1 + 122572 0.7 0.461921
Target:  5'- cGCGGCgaacgaacccgUCCCGuugggaUCGCaGGCGGCCgggaaGCg -3'
miRNA:   3'- -CGCCG-----------AGGGC------AGCGcCCGUCGGaa---CG- -5'
9772 5' -61.8 NC_002577.1 + 11042 0.7 0.461921
Target:  5'- cGCGGCgaacgaacccgUCCCGuugggaUCGCaGGCGGCCgggaaGCg -3'
miRNA:   3'- -CGCCG-----------AGGGC------AGCGcCCGUCGGaa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.