miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9773 3' -53.7 NC_002577.1 + 2904 0.66 0.960905
Target:  5'- aGggUaGGCGUcgagaaaauCGCGAccGAGGgugCGCCCu -3'
miRNA:   3'- -CuuA-CCGCAac-------GCGCU--UUCCa--GCGGG- -5'
9773 3' -53.7 NC_002577.1 + 3436 0.67 0.953332
Target:  5'- --uUGuGCugUGUGUGAGAGGUCGUCa -3'
miRNA:   3'- cuuAC-CGcaACGCGCUUUCCAGCGGg -5'
9773 3' -53.7 NC_002577.1 + 4299 0.68 0.919356
Target:  5'- cGGUGuccuGUGUUGUGUGAGAGGUC-UCCg -3'
miRNA:   3'- cUUAC----CGCAACGCGCUUUCCAGcGGG- -5'
9773 3' -53.7 NC_002577.1 + 4492 0.72 0.742638
Target:  5'- ---cGGCGggGCGCGGGAcuUCGUCCu -3'
miRNA:   3'- cuuaCCGCaaCGCGCUUUccAGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 6657 0.66 0.964354
Target:  5'- cGAGaGGCGUggGgGgGggGGGagGCCUg -3'
miRNA:   3'- -CUUaCCGCAa-CgCgCuuUCCagCGGG- -5'
9773 3' -53.7 NC_002577.1 + 9175 0.66 0.967583
Target:  5'- --cUGGCGaugGCGCGGGcGGGggaGUCCg -3'
miRNA:   3'- cuuACCGCaa-CGCGCUU-UCCag-CGGG- -5'
9773 3' -53.7 NC_002577.1 + 10960 0.66 0.964354
Target:  5'- ----cGCGUU-CGCG-GGGGUCGCCg -3'
miRNA:   3'- cuuacCGCAAcGCGCuUUCCAGCGGg -5'
9773 3' -53.7 NC_002577.1 + 11923 0.68 0.913533
Target:  5'- ---cGGCGUcGUucucuccgGCGuccGGGUCGCCCc -3'
miRNA:   3'- cuuaCCGCAaCG--------CGCuu-UCCAGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 17597 0.66 0.972588
Target:  5'- gGGAUGGCGcauuaucgcccagugGCGCGAAAcgggcGGagGUCCg -3'
miRNA:   3'- -CUUACCGCaa-------------CGCGCUUU-----CCagCGGG- -5'
9773 3' -53.7 NC_002577.1 + 22099 0.68 0.930274
Target:  5'- ---cGGUaUUGauauGCGucGGGUCGCCCa -3'
miRNA:   3'- cuuaCCGcAACg---CGCuuUCCAGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 67524 0.66 0.964354
Target:  5'- ---cGGCGUUcGCaGCuuuGGAAGGcacaUCGCCCc -3'
miRNA:   3'- cuuaCCGCAA-CG-CG---CUUUCC----AGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 89283 0.66 0.97231
Target:  5'- gGAAUGGUGUcguggaucgcacaGCGCGAAA--UCGCCa -3'
miRNA:   3'- -CUUACCGCAa------------CGCGCUUUccAGCGGg -5'
9773 3' -53.7 NC_002577.1 + 90999 0.69 0.901162
Target:  5'- uGAUGGCcgcgaaUGCGgGGGAGcGUCGaCCCa -3'
miRNA:   3'- cUUACCGca----ACGCgCUUUC-CAGC-GGG- -5'
9773 3' -53.7 NC_002577.1 + 91800 0.67 0.949198
Target:  5'- ---cGGUcaGUUGUgaauuuGCGAAggcGGGUUGCCCg -3'
miRNA:   3'- cuuaCCG--CAACG------CGCUU---UCCAGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 118020 0.67 0.949198
Target:  5'- ---cGGCGUaG-GCGAAccugaGGGUgCGCCCc -3'
miRNA:   3'- cuuaCCGCAaCgCGCUU-----UCCA-GCGGG- -5'
9773 3' -53.7 NC_002577.1 + 121691 0.68 0.913533
Target:  5'- ---cGGCGUcGUucucuccgGCGuccGGGUCGCCCc -3'
miRNA:   3'- cuuaCCGCAaCG--------CGCuu-UCCAGCGGG- -5'
9773 3' -53.7 NC_002577.1 + 122654 0.66 0.964354
Target:  5'- ----cGCGUU-CGCG-GGGGUCGCCg -3'
miRNA:   3'- cuuacCGCAAcGCGCuUUCCAGCGGg -5'
9773 3' -53.7 NC_002577.1 + 124439 0.66 0.967583
Target:  5'- --cUGGCGaugGCGCGGGcGGGggaGUCCg -3'
miRNA:   3'- cuuACCGCaa-CGCGCUU-UCCag-CGGG- -5'
9773 3' -53.7 NC_002577.1 + 126956 0.66 0.964354
Target:  5'- cGAGaGGCGUggGgGgGggGGGagGCCUg -3'
miRNA:   3'- -CUUaCCGCAa-CgCgCuuUCCagCGGG- -5'
9773 3' -53.7 NC_002577.1 + 129122 0.72 0.742638
Target:  5'- ---cGGCGggGCGCGGGAcuUCGUCCu -3'
miRNA:   3'- cuuaCCGCaaCGCGCUUUccAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.