Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 157294 | 1.13 | 0.00281 |
Target: 5'- cGAAUGGCGUUGCGCGAAAGGUCGCCCg -3' miRNA: 3'- -CUUACCGCAACGCGCUUUCCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 124439 | 0.66 | 0.967583 |
Target: 5'- --cUGGCGaugGCGCGGGcGGGggaGUCCg -3' miRNA: 3'- cuuACCGCaa-CGCGCUU-UCCag-CGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 89283 | 0.66 | 0.97231 |
Target: 5'- gGAAUGGUGUcguggaucgcacaGCGCGAAA--UCGCCa -3' miRNA: 3'- -CUUACCGCAa------------CGCGCUUUccAGCGGg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 136649 | 0.66 | 0.973409 |
Target: 5'- ---gGGaacCGUccauaaUGCGCGcgGGGUCGCgCCa -3' miRNA: 3'- cuuaCC---GCA------ACGCGCuuUCCAGCG-GG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 136027 | 0.69 | 0.89462 |
Target: 5'- ---aGGCGUUGCagGUGuuccAGGaCGCCCg -3' miRNA: 3'- cuuaCCGCAACG--CGCuu--UCCaGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 90999 | 0.69 | 0.901162 |
Target: 5'- uGAUGGCcgcgaaUGCGgGGGAGcGUCGaCCCa -3' miRNA: 3'- cUUACCGca----ACGCgCUUUC-CAGC-GGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 129315 | 0.68 | 0.919356 |
Target: 5'- cGGUGuccuGUGUUGUGUGAGAGGUC-UCCg -3' miRNA: 3'- cUUAC----CGCAACGCGCUUUCCAGcGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 140721 | 0.67 | 0.944828 |
Target: 5'- ---cGGgGggGgGUGggGGGggcaCGCCCg -3' miRNA: 3'- cuuaCCgCaaCgCGCuuUCCa---GCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 162935 | 0.67 | 0.953332 |
Target: 5'- ---cGGCGgcgGCaGgGGGuuucGGUCGCCCu -3' miRNA: 3'- cuuaCCGCaa-CG-CgCUUu---CCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 134743 | 0.66 | 0.967583 |
Target: 5'- --uUGGCGgaGCgcaggGCGAAAGGaccccgcuuUCGCCg -3' miRNA: 3'- cuuACCGCaaCG-----CGCUUUCC---------AGCGGg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 155639 | 0.66 | 0.964354 |
Target: 5'- uGGUGGUGUUGgGCGggGGGcaagaaGCg- -3' miRNA: 3'- cUUACCGCAACgCGCuuUCCag----CGgg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 130178 | 0.67 | 0.953332 |
Target: 5'- --uUGuGCugUGUGUGAGAGGUCGUCa -3' miRNA: 3'- cuuAC-CGcaACGCGCUUUCCAGCGGg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 161517 | 0.73 | 0.692553 |
Target: 5'- -uGUGGCcggGCGCcAGAGGcCGCCCg -3' miRNA: 3'- cuUACCGcaaCGCGcUUUCCaGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 126956 | 0.66 | 0.964354 |
Target: 5'- cGAGaGGCGUggGgGgGggGGGagGCCUg -3' miRNA: 3'- -CUUaCCGCAa-CgCgCuuUCCagCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 140654 | 0.72 | 0.722833 |
Target: 5'- cGAAUGGUGUUGaGCGAAcGGUC-CCg -3' miRNA: 3'- -CUUACCGCAACgCGCUUuCCAGcGGg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 91800 | 0.67 | 0.949198 |
Target: 5'- ---cGGUcaGUUGUgaauuuGCGAAggcGGGUUGCCCg -3' miRNA: 3'- cuuaCCG--CAACG------CGCUU---UCCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 122654 | 0.66 | 0.964354 |
Target: 5'- ----cGCGUU-CGCG-GGGGUCGCCg -3' miRNA: 3'- cuuacCGCAAcGCGCuUUCCAGCGGg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 137805 | 0.66 | 0.970599 |
Target: 5'- ---cGGCGaUGUGCGGuag--CGCCCa -3' miRNA: 3'- cuuaCCGCaACGCGCUuuccaGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 129122 | 0.72 | 0.742638 |
Target: 5'- ---cGGCGggGCGCGGGAcuUCGUCCu -3' miRNA: 3'- cuuaCCGCaaCGCGCUUUccAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 121691 | 0.68 | 0.913533 |
Target: 5'- ---cGGCGUcGUucucuccgGCGuccGGGUCGCCCc -3' miRNA: 3'- cuuaCCGCAaCG--------CGCuu-UCCAGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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