miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9774 3' -68.4 NC_002577.1 + 8821 0.68 0.30859
Target:  5'- cGUGCCC-CUCCCCCaacuaaCCCUucgcgcgcaccgcggGCCUCGg -3'
miRNA:   3'- uCACGGGcGAGGGGGa-----GGGG---------------CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 83154 0.68 0.291405
Target:  5'- --aGCCCGUcucguagcgacucgUCCCCUUCCCCcGCUaCCGu -3'
miRNA:   3'- ucaCGGGCG--------------AGGGGGAGGGG-CGG-GGC- -5'
9774 3' -68.4 NC_002577.1 + 134776 0.66 0.414604
Target:  5'- --cGCcgCCGCUCCUCCUCCUCGUacaggCCaCGg -3'
miRNA:   3'- ucaCG--GGCGAGGGGGAGGGGCG-----GG-GC- -5'
9774 3' -68.4 NC_002577.1 + 123900 0.67 0.32586
Target:  5'- --gGCCgGCUauuuccCUCCCUCCCCcCCCCc -3'
miRNA:   3'- ucaCGGgCGA------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 158716 0.68 0.287074
Target:  5'- --cGUCCGCUUCCuCUUCCUCGUCCUc -3'
miRNA:   3'- ucaCGGGCGAGGG-GGAGGGGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 5110 0.66 0.406659
Target:  5'- --cGCgCGCgUCgCCCUgUCCGUCCCGg -3'
miRNA:   3'- ucaCGgGCG-AGgGGGAgGGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 142291 0.68 0.280975
Target:  5'- --cGaCCCGCgcccccCCCCCcCCCCcCCCCGa -3'
miRNA:   3'- ucaC-GGGCGa-----GGGGGaGGGGcGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 131863 0.69 0.2732
Target:  5'- uGG-GCCCGUUagggcuaggagcgaCCCUCUCCCCcCCCCc -3'
miRNA:   3'- -UCaCGGGCGA--------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 161251 0.68 0.302137
Target:  5'- aGGUGCaCCGuCUCgCCCCgcagccaaugcuccgUCCgauggccuggCCGCCCCGa -3'
miRNA:   3'- -UCACG-GGC-GAG-GGGG---------------AGG----------GGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 142561 0.75 0.093348
Target:  5'- uAGgGCCgGCcCCCCCUCCCCcacgcagcgccuauuGCCCCGu -3'
miRNA:   3'- -UCaCGGgCGaGGGGGAGGGG---------------CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 1750 0.69 0.2732
Target:  5'- uGG-GCCCGUUagggcuaggagcgaCCCUCUCCCCcCCCCc -3'
miRNA:   3'- -UCaCGGGCGA--------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 138621 0.68 0.287074
Target:  5'- --cGUCCGCUUCCuCUUCCUCGUCCUc -3'
miRNA:   3'- ucaCGGGCGAGGG-GGAGGGGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 155048 0.68 0.293277
Target:  5'- --cGaCCCGCgCCCCCcCCCCcCCCCc -3'
miRNA:   3'- ucaC-GGGCGaGGGGGaGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 8138 0.68 0.305996
Target:  5'- -cUGCCCGCgCCCgCgCUCCgCGCUCCc -3'
miRNA:   3'- ucACGGGCGaGGG-G-GAGGgGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 138900 0.67 0.346664
Target:  5'- gAGcGCCCauGUUuccCCCCCUUCCCGUUCCa -3'
miRNA:   3'- -UCaCGGG--CGA---GGGGGAGGGGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 157120 0.72 0.163791
Target:  5'- --aGCCCGCgCCCCUgguacgggggcCCCCGCCCuCGg -3'
miRNA:   3'- ucaCGGGCGaGGGGGa----------GGGGCGGG-GC- -5'
9774 3' -68.4 NC_002577.1 + 124709 0.72 0.156321
Target:  5'- cGGUcGCCCGUcgccccCCCCCUCgcacauCCCGCCUCGg -3'
miRNA:   3'- -UCA-CGGGCGa-----GGGGGAG------GGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 1838 0.72 0.149161
Target:  5'- -cUGCCaCGCUuagguucccaucCCCCCUCCCCcCCCCc -3'
miRNA:   3'- ucACGG-GCGA------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 143739 0.72 0.149161
Target:  5'- aAGUGgCUGacacauaccCCCCCUCCCCcaGCCCCGa -3'
miRNA:   3'- -UCACgGGCga-------GGGGGAGGGG--CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 115416 0.74 0.109487
Target:  5'- aAGUGUCUGCUUUCCucgucaugagCUCCCCGCCgCCGa -3'
miRNA:   3'- -UCACGGGCGAGGGG----------GAGGGGCGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.