Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9774 | 3' | -68.4 | NC_002577.1 | + | 157505 | 1.08 | 0.000355 |
Target: 5'- gAGUGCCCGCUCCCCCUCCCCGCCCCGa -3' miRNA: 3'- -UCACGGGCGAGGGGGAGGGGCGGGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 8821 | 0.68 | 0.30859 |
Target: 5'- cGUGCCC-CUCCCCCaacuaaCCCUucgcgcgcaccgcggGCCUCGg -3' miRNA: 3'- uCACGGGcGAGGGGGa-----GGGG---------------CGGGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 105786 | 0.67 | 0.319134 |
Target: 5'- --aGCCgGCcgCUCUCUCCCCGCgCUGa -3' miRNA: 3'- ucaCGGgCGa-GGGGGAGGGGCGgGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 134776 | 0.66 | 0.414604 |
Target: 5'- --cGCcgCCGCUCCUCCUCCUCGUacaggCCaCGg -3' miRNA: 3'- ucaCG--GGCGAGGGGGAGGGGCG-----GG-GC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 140218 | 0.72 | 0.163791 |
Target: 5'- --aGCCCGCgCCCCUgguacgggggcCCCCGCCCuCGg -3' miRNA: 3'- ucaCGGGCGaGGGGGa----------GGGGCGGG-GC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 11426 | 0.69 | 0.24114 |
Target: 5'- --cGgCCGuCUCCCCCUUCCCuucCCCCa -3' miRNA: 3'- ucaCgGGC-GAGGGGGAGGGGc--GGGGc -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 157312 | 0.69 | 0.24114 |
Target: 5'- aGGUcGCCCGCUgCCCCaggagccggucuUCCCgUGCCCUc -3' miRNA: 3'- -UCA-CGGGCGAgGGGG------------AGGG-GCGGGGc -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 156431 | 0.69 | 0.252017 |
Target: 5'- cGUGCCC---CCCCCaCCCCcCCCCGa -3' miRNA: 3'- uCACGGGcgaGGGGGaGGGGcGGGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 131863 | 0.69 | 0.2732 |
Target: 5'- uGG-GCCCGUUagggcuaggagcgaCCCUCUCCCCcCCCCc -3' miRNA: 3'- -UCaCGGGCGA--------------GGGGGAGGGGcGGGGc -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 125476 | 0.68 | 0.305996 |
Target: 5'- -cUGCCCGCgCCCgCgCUCCgCGCUCCc -3' miRNA: 3'- ucACGGGCGaGGG-G-GAGGgGCGGGGc -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 158716 | 0.68 | 0.287074 |
Target: 5'- --cGUCCGCUUCCuCUUCCUCGUCCUc -3' miRNA: 3'- ucaCGGGCGAGGG-GGAGGGGCGGGGc -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 158108 | 0.69 | 0.269085 |
Target: 5'- aGGUGCCUuucgaaauGCcCCCCC-CgCCCGCCaCCGc -3' miRNA: 3'- -UCACGGG--------CGaGGGGGaG-GGGCGG-GGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 154775 | 0.75 | 0.093348 |
Target: 5'- uAGgGCCgGCcCCCCCUCCCCcacgcagcgccuauuGCCCCGu -3' miRNA: 3'- -UCaCGGgCGaGGGGGAGGGG---------------CGGGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 83154 | 0.68 | 0.291405 |
Target: 5'- --aGCCCGUcucguagcgacucgUCCCCUUCCCCcGCUaCCGu -3' miRNA: 3'- ucaCGGGCG--------------AGGGGGAGGGG-CGG-GGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 131775 | 0.72 | 0.149161 |
Target: 5'- -cUGCCaCGCUuagguucccaucCCCCCUCCCCcCCCCc -3' miRNA: 3'- ucACGG-GCGA------------GGGGGAGGGGcGGGGc -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 135179 | 0.69 | 0.263294 |
Target: 5'- gAGUGacucccCCCGCcCCCCC-CCCCGaCCUGa -3' miRNA: 3'- -UCAC------GGGCGaGGGGGaGGGGCgGGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 161251 | 0.68 | 0.302137 |
Target: 5'- aGGUGCaCCGuCUCgCCCCgcagccaaugcuccgUCCgauggccuggCCGCCCCGa -3' miRNA: 3'- -UCACG-GGC-GAG-GGGG---------------AGG----------GGCGGGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 134174 | 0.68 | 0.312513 |
Target: 5'- --cGCCCcC-CCCCC-CCCC-CCCCGa -3' miRNA: 3'- ucaCGGGcGaGGGGGaGGGGcGGGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 8905 | 0.72 | 0.156321 |
Target: 5'- cGGUcGCCCGUcgccccCCCCCUCgcacauCCCGCCUCGg -3' miRNA: 3'- -UCA-CGGGCGa-----GGGGGAG------GGGCGGGGC- -5' |
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9774 | 3' | -68.4 | NC_002577.1 | + | 122889 | 0.69 | 0.24114 |
Target: 5'- gGGUcGCCCcccgacuUUCCCCCcggCCCCGCaCCCGc -3' miRNA: 3'- -UCA-CGGGc------GAGGGGGa--GGGGCG-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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