miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9774 3' -68.4 NC_002577.1 + 1750 0.69 0.2732
Target:  5'- uGG-GCCCGUUagggcuaggagcgaCCCUCUCCCCcCCCCc -3'
miRNA:   3'- -UCaCGGGCGA--------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 1838 0.72 0.149161
Target:  5'- -cUGCCaCGCUuagguucccaucCCCCCUCCCCcCCCCc -3'
miRNA:   3'- ucACGG-GCGA------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 5110 0.66 0.406659
Target:  5'- --cGCgCGCgUCgCCCUgUCCGUCCCGg -3'
miRNA:   3'- ucaCGgGCG-AGgGGGAgGGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 6083 0.66 0.391058
Target:  5'- --aGCCU--UCCCCCUCCCCcCUCCc -3'
miRNA:   3'- ucaCGGGcgAGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 6122 0.66 0.391058
Target:  5'- --aGCCU--UCCCCCUCCCCcCUCCc -3'
miRNA:   3'- ucaCGGGcgAGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 7148 0.66 0.383406
Target:  5'- ---cCCCcCcCCCCCUCCCCcCCCCa -3'
miRNA:   3'- ucacGGGcGaGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 8138 0.68 0.305996
Target:  5'- -cUGCCCGCgCCCgCgCUCCgCGCUCCc -3'
miRNA:   3'- ucACGGGCGaGGG-G-GAGGgGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 8237 0.67 0.32586
Target:  5'- --cGCCCGC-CagCCUCUCCGgCCCGg -3'
miRNA:   3'- ucaCGGGCGaGggGGAGGGGCgGGGC- -5'
9774 3' -68.4 NC_002577.1 + 8821 0.68 0.30859
Target:  5'- cGUGCCC-CUCCCCCaacuaaCCCUucgcgcgcaccgcggGCCUCGg -3'
miRNA:   3'- uCACGGGcGAGGGGGa-----GGGG---------------CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 8905 0.72 0.156321
Target:  5'- cGGUcGCCCGUcgccccCCCCCUCgcacauCCCGCCUCGg -3'
miRNA:   3'- -UCA-CGGGCGa-----GGGGGAG------GGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 9713 0.67 0.32586
Target:  5'- --gGCCgGCUauuuccCUCCCUCCCCcCCCCc -3'
miRNA:   3'- ucaCGGgCGA------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 10724 0.69 0.24114
Target:  5'- gGGUcGCCCcccgacuUUCCCCCcggCCCCGCaCCCGc -3'
miRNA:   3'- -UCA-CGGGc------GAGGGGGa--GGGGCG-GGGC- -5'
9774 3' -68.4 NC_002577.1 + 11426 0.69 0.24114
Target:  5'- --cGgCCGuCUCCCCCUUCCCuucCCCCa -3'
miRNA:   3'- ucaCgGGC-GAGGGGGAGGGGc--GGGGc -5'
9774 3' -68.4 NC_002577.1 + 58231 0.71 0.188157
Target:  5'- gAGUGCCCGUggcgCUaccuagcgaggCCCUUCCCuCCCCGg -3'
miRNA:   3'- -UCACGGGCGa---GG-----------GGGAGGGGcGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 83154 0.68 0.291405
Target:  5'- --aGCCCGUcucguagcgacucgUCCCCUUCCCCcGCUaCCGu -3'
miRNA:   3'- ucaCGGGCG--------------AGGGGGAGGGG-CGG-GGC- -5'
9774 3' -68.4 NC_002577.1 + 101576 0.69 0.262721
Target:  5'- cAGUGCUCGCuaacuuaUCUCCgCUCCCCGacaCCGa -3'
miRNA:   3'- -UCACGGGCG-------AGGGG-GAGGGGCgg-GGC- -5'
9774 3' -68.4 NC_002577.1 + 105786 0.67 0.319134
Target:  5'- --aGCCgGCcgCUCUCUCCCCGCgCUGa -3'
miRNA:   3'- ucaCGGgCGa-GGGGGAGGGGCGgGGC- -5'
9774 3' -68.4 NC_002577.1 + 115416 0.74 0.109487
Target:  5'- aAGUGUCUGCUUUCCucgucaugagCUCCCCGCCgCCGa -3'
miRNA:   3'- -UCACGGGCGAGGGG----------GAGGGGCGG-GGC- -5'
9774 3' -68.4 NC_002577.1 + 122188 0.69 0.24114
Target:  5'- --cGgCCGuCUCCCCCUUCCCuucCCCCa -3'
miRNA:   3'- ucaCgGGC-GAGGGGGAGGGGc--GGGGc -5'
9774 3' -68.4 NC_002577.1 + 122889 0.69 0.24114
Target:  5'- gGGUcGCCCcccgacuUUCCCCCcggCCCCGCaCCCGc -3'
miRNA:   3'- -UCA-CGGGc------GAGGGGGa--GGGGCG-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.