miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9774 3' -68.4 NC_002577.1 + 157505 1.08 0.000355
Target:  5'- gAGUGCCCGCUCCCCCUCCCCGCCCCGa -3'
miRNA:   3'- -UCACGGGCGAGGGGGAGGGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 139833 1.08 0.000355
Target:  5'- gAGUGCCCGCUCCCCCUCCCCGCCCCGa -3'
miRNA:   3'- -UCACGGGCGAGGGGGAGGGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 154775 0.75 0.093348
Target:  5'- uAGgGCCgGCcCCCCCUCCCCcacgcagcgccuauuGCCCCGu -3'
miRNA:   3'- -UCaCGGgCGaGGGGGAGGGG---------------CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 142561 0.75 0.093348
Target:  5'- uAGgGCCgGCcCCCCCUCCCCcacgcagcgccuauuGCCCCGu -3'
miRNA:   3'- -UCaCGGgCGaGGGGGAGGGG---------------CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 115416 0.74 0.109487
Target:  5'- aAGUGUCUGCUUUCCucgucaugagCUCCCCGCCgCCGa -3'
miRNA:   3'- -UCACGGGCGAGGGG----------GAGGGGCGG-GGC- -5'
9774 3' -68.4 NC_002577.1 + 143739 0.72 0.149161
Target:  5'- aAGUGgCUGacacauaccCCCCCUCCCCcaGCCCCGa -3'
miRNA:   3'- -UCACgGGCga-------GGGGGAGGGG--CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 1838 0.72 0.149161
Target:  5'- -cUGCCaCGCUuagguucccaucCCCCCUCCCCcCCCCc -3'
miRNA:   3'- ucACGG-GCGA------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 131775 0.72 0.149161
Target:  5'- -cUGCCaCGCUuagguucccaucCCCCCUCCCCcCCCCc -3'
miRNA:   3'- ucACGG-GCGA------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 124709 0.72 0.156321
Target:  5'- cGGUcGCCCGUcgccccCCCCCUCgcacauCCCGCCUCGg -3'
miRNA:   3'- -UCA-CGGGCGa-----GGGGGAG------GGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 8905 0.72 0.156321
Target:  5'- cGGUcGCCCGUcgccccCCCCCUCgcacauCCCGCCUCGg -3'
miRNA:   3'- -UCA-CGGGCGa-----GGGGGAG------GGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 157120 0.72 0.163791
Target:  5'- --aGCCCGCgCCCCUgguacgggggcCCCCGCCCuCGg -3'
miRNA:   3'- ucaCGGGCGaGGGGGa----------GGGGCGGG-GC- -5'
9774 3' -68.4 NC_002577.1 + 140218 0.72 0.163791
Target:  5'- --aGCCCGCgCCCCUgguacgggggcCCCCGCCCuCGg -3'
miRNA:   3'- ucaCGGGCGaGGGGGa----------GGGGCGGG-GC- -5'
9774 3' -68.4 NC_002577.1 + 58231 0.71 0.188157
Target:  5'- gAGUGCCCGUggcgCUaccuagcgaggCCCUUCCCuCCCCGg -3'
miRNA:   3'- -UCACGGGCGa---GG-----------GGGAGGGGcGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 140818 0.7 0.230657
Target:  5'- --cGCCCaCUCCCCCuacaccaccUCCCCuuaGCCCCc -3'
miRNA:   3'- ucaCGGGcGAGGGGG---------AGGGG---CGGGGc -5'
9774 3' -68.4 NC_002577.1 + 11426 0.69 0.24114
Target:  5'- --cGgCCGuCUCCCCCUUCCCuucCCCCa -3'
miRNA:   3'- ucaCgGGC-GAGGGGGAGGGGc--GGGGc -5'
9774 3' -68.4 NC_002577.1 + 122889 0.69 0.24114
Target:  5'- gGGUcGCCCcccgacuUUCCCCCcggCCCCGCaCCCGc -3'
miRNA:   3'- -UCA-CGGGc------GAGGGGGa--GGGGCG-GGGC- -5'
9774 3' -68.4 NC_002577.1 + 157312 0.69 0.24114
Target:  5'- aGGUcGCCCGCUgCCCCaggagccggucuUCCCgUGCCCUc -3'
miRNA:   3'- -UCA-CGGGCGAgGGGG------------AGGG-GCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 10724 0.69 0.24114
Target:  5'- gGGUcGCCCcccgacuUUCCCCCcggCCCCGCaCCCGc -3'
miRNA:   3'- -UCA-CGGGc------GAGGGGGa--GGGGCG-GGGC- -5'
9774 3' -68.4 NC_002577.1 + 122188 0.69 0.24114
Target:  5'- --cGgCCGuCUCCCCCUUCCCuucCCCCa -3'
miRNA:   3'- ucaCgGGC-GAGGGGGAGGGGc--GGGGc -5'
9774 3' -68.4 NC_002577.1 + 140026 0.69 0.24114
Target:  5'- aGGUcGCCCGCUgCCCCaggagccggucuUCCCgUGCCCUc -3'
miRNA:   3'- -UCA-CGGGCGAgGGGG------------AGGG-GCGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.