miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 3' -53.9 NC_002577.1 + 46922 0.68 0.93187
Target:  5'- cGGUGCgauugGCGGAcaguCGGucg-CCGGAGg -3'
miRNA:   3'- -CCGCGa----CGCCUu---GCCuuuaGGCCUUg -5'
9775 3' -53.9 NC_002577.1 + 54912 0.68 0.909502
Target:  5'- aGCGCUGCGaguCGcGAGGUCCaaauagucaGGAACg -3'
miRNA:   3'- cCGCGACGCcuuGC-CUUUAGG---------CCUUG- -5'
9775 3' -53.9 NC_002577.1 + 55013 0.7 0.845652
Target:  5'- gGGCGCUGCGaauuCGGGAguggcGUUCGGuACa -3'
miRNA:   3'- -CCGCGACGCcuu-GCCUU-----UAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 69063 0.69 0.89023
Target:  5'- cGCGUUgGgGGAGCGGAAAaa-GGAGCu -3'
miRNA:   3'- cCGCGA-CgCCUUGCCUUUaggCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 70794 0.76 0.524566
Target:  5'- cGGCGUUGCGGcAGCuaugacauaGGAAAUCCGGu-- -3'
miRNA:   3'- -CCGCGACGCC-UUG---------CCUUUAGGCCuug -5'
9775 3' -53.9 NC_002577.1 + 70903 0.68 0.919478
Target:  5'- uGGCGCUGUugcuaaacgucccuGGAACc----UCCGGGACa -3'
miRNA:   3'- -CCGCGACG--------------CCUUGccuuuAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 72464 0.69 0.883344
Target:  5'- uGGCGCUGCuaaaGGcACGGGAa--CGGAAg -3'
miRNA:   3'- -CCGCGACG----CCuUGCCUUuagGCCUUg -5'
9775 3' -53.9 NC_002577.1 + 76425 0.73 0.717455
Target:  5'- aGGCG--GCGGu-CGGGAGUCCGGcGCa -3'
miRNA:   3'- -CCGCgaCGCCuuGCCUUUAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 81400 0.68 0.926639
Target:  5'- cGGCGCUGCaGAACGccguAUCCGauguaaacaGGGCg -3'
miRNA:   3'- -CCGCGACGcCUUGCcuu-UAGGC---------CUUG- -5'
9775 3' -53.9 NC_002577.1 + 91929 0.7 0.85282
Target:  5'- uGCGCUGCGGGAgaGAAuacaggcGUCCGGGu- -3'
miRNA:   3'- cCGCGACGCCUUgcCUU-------UAGGCCUug -5'
9775 3' -53.9 NC_002577.1 + 94727 0.69 0.896887
Target:  5'- uGCGagaaUGCGGAuacCGGAGAagCgCGGAACa -3'
miRNA:   3'- cCGCg---ACGCCUu--GCCUUUa-G-GCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 100186 0.69 0.868904
Target:  5'- aGGCGCUGCcGAG-GGAAuaauUCCGGucCa -3'
miRNA:   3'- -CCGCGACGcCUUgCCUUu---AGGCCuuG- -5'
9775 3' -53.9 NC_002577.1 + 101378 0.66 0.974068
Target:  5'- cGGUGUcGgGGAGCGGAGAUaaguuaGcGAGCa -3'
miRNA:   3'- -CCGCGaCgCCUUGCCUUUAgg----C-CUUG- -5'
9775 3' -53.9 NC_002577.1 + 115571 0.69 0.868904
Target:  5'- uGGCGuCUGCGGcGCGcGAAGcuguguUgCGGGGCg -3'
miRNA:   3'- -CCGC-GACGCCuUGC-CUUU------AgGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 121934 0.69 0.883344
Target:  5'- cGGaCGCcgagagggaUGCGGAGCGcGAGAg-CGGAGCc -3'
miRNA:   3'- -CC-GCG---------ACGCCUUGC-CUUUagGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 122139 0.73 0.707447
Target:  5'- cGGCGCU-CuaAGCGGAGAUCCGGcGCc -3'
miRNA:   3'- -CCGCGAcGccUUGCCUUUAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 123785 0.69 0.883344
Target:  5'- uGGuCGCUaUGGGAUcGGGAUCCGGAAUc -3'
miRNA:   3'- -CC-GCGAcGCCUUGcCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 124446 0.69 0.876234
Target:  5'- uGGCGCggGCGG---GGGAGUCCGucGCg -3'
miRNA:   3'- -CCGCGa-CGCCuugCCUUUAGGCcuUG- -5'
9775 3' -53.9 NC_002577.1 + 125112 0.67 0.936861
Target:  5'- cGCGCgGcCGGGACGGGAuUCCuGAu- -3'
miRNA:   3'- cCGCGaC-GCCUUGCCUUuAGGcCUug -5'
9775 3' -53.9 NC_002577.1 + 126960 0.66 0.971324
Target:  5'- aGGCGUggGgGGGGgGGGAggCCuGAACg -3'
miRNA:   3'- -CCGCGa-CgCCUUgCCUUuaGGcCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.