miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 3' -53.9 NC_002577.1 + 1131 0.7 0.860593
Target:  5'- cGGCGCUGUagucgccGGAugcagucaggacACGGAAauuaagcgcGUCCGGAc- -3'
miRNA:   3'- -CCGCGACG-------CCU------------UGCCUU---------UAGGCCUug -5'
9775 3' -53.9 NC_002577.1 + 3214 0.7 0.837502
Target:  5'- aGGCGCUGCGGAGCGc--AUCgCGuGGu- -3'
miRNA:   3'- -CCGCGACGCCUUGCcuuUAG-GC-CUug -5'
9775 3' -53.9 NC_002577.1 + 3253 0.69 0.89023
Target:  5'- cGUGCUGgaGGAA-GGAGAuggcgcucuacUCCGGGACg -3'
miRNA:   3'- cCGCGACg-CCUUgCCUUU-----------AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 4507 0.66 0.971324
Target:  5'- cGGUGCUguuauuuucgGCGGGgcGCGGGAcuucGUCCuGGGCc -3'
miRNA:   3'- -CCGCGA----------CGCCU--UGCCUU----UAGGcCUUG- -5'
9775 3' -53.9 NC_002577.1 + 6653 0.66 0.971324
Target:  5'- aGGCGUggGgGGGGgGGGAggCCuGAACg -3'
miRNA:   3'- -CCGCGa-CgCCUUgCCUUuaGGcCUUG- -5'
9775 3' -53.9 NC_002577.1 + 8502 0.67 0.936861
Target:  5'- cGCGCgGcCGGGACGGGAuUCCuGAu- -3'
miRNA:   3'- cCGCGaC-GCCUUGCCUUuAGGcCUug -5'
9775 3' -53.9 NC_002577.1 + 9168 0.69 0.876234
Target:  5'- uGGCGCggGCGG---GGGAGUCCGucGCg -3'
miRNA:   3'- -CCGCGa-CGCCuugCCUUUAGGCcuUG- -5'
9775 3' -53.9 NC_002577.1 + 9828 0.69 0.883344
Target:  5'- uGGuCGCUaUGGGAUcGGGAUCCGGAAUc -3'
miRNA:   3'- -CC-GCGAcGCCUUGcCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 11475 0.73 0.707447
Target:  5'- cGGCGCU-CuaAGCGGAGAUCCGGcGCc -3'
miRNA:   3'- -CCGCGAcGccUUGCCUUUAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 11680 0.69 0.883344
Target:  5'- cGGaCGCcgagagggaUGCGGAGCGcGAGAg-CGGAGCc -3'
miRNA:   3'- -CC-GCG---------ACGCCUUGC-CUUUagGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 13731 0.67 0.936861
Target:  5'- cGGCGaccCUGCGGAagACGG---UUCGGAAa -3'
miRNA:   3'- -CCGC---GACGCCU--UGCCuuuAGGCCUUg -5'
9775 3' -53.9 NC_002577.1 + 15706 0.72 0.766203
Target:  5'- -uUGCUGaGGAuuuCGGGAGUCUGGGACc -3'
miRNA:   3'- ccGCGACgCCUu--GCCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 16673 0.66 0.961852
Target:  5'- cGCGCUGCGcAAUGG----UCGGGGCa -3'
miRNA:   3'- cCGCGACGCcUUGCCuuuaGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 17575 0.68 0.915454
Target:  5'- uGGCGCgaaaCGG-GCGGAGGUCCGa--- -3'
miRNA:   3'- -CCGCGac--GCCuUGCCUUUAGGCcuug -5'
9775 3' -53.9 NC_002577.1 + 18794 0.67 0.946124
Target:  5'- cGCGCcGUGG-ACGGAAcuacgcAUCCGGugguGCc -3'
miRNA:   3'- cCGCGaCGCCuUGCCUU------UAGGCCu---UG- -5'
9775 3' -53.9 NC_002577.1 + 21205 0.71 0.793176
Target:  5'- uGCGCUGCucuauccGGGACGGcAAccUCCGGAu- -3'
miRNA:   3'- cCGCGACG-------CCUUGCCuUU--AGGCCUug -5'
9775 3' -53.9 NC_002577.1 + 43205 0.68 0.909502
Target:  5'- uGGuUGC-GCGGAACGGAuAagCGGGAUc -3'
miRNA:   3'- -CC-GCGaCGCCUUGCCUuUagGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 43939 0.71 0.811953
Target:  5'- uGGCGCccaaaaacUGUGGAACGGGAGgagcUCUGccGAGCa -3'
miRNA:   3'- -CCGCG--------ACGCCUUGCCUUU----AGGC--CUUG- -5'
9775 3' -53.9 NC_002577.1 + 44390 0.72 0.766203
Target:  5'- uGGCGgaGCGGAcaACGGcGAUUcucuaCGGAACc -3'
miRNA:   3'- -CCGCgaCGCCU--UGCCuUUAG-----GCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 46320 0.66 0.970462
Target:  5'- cGUGCUGCGcGAaagggguaucaguaGCGGAGucggCGGAGCc -3'
miRNA:   3'- cCGCGACGC-CU--------------UGCCUUuag-GCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.