miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 3' -53.9 NC_002577.1 + 158186 1.11 0.004005
Target:  5'- uGGCGCUGCGGAACGGAAAUCCGGAACc -3'
miRNA:   3'- -CCGCGACGCCUUGCCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 139152 1.11 0.004005
Target:  5'- uGGCGCUGCGGAACGGAAAUCCGGAACc -3'
miRNA:   3'- -CCGCGACGCCUUGCCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 70794 0.76 0.524566
Target:  5'- cGGCGUUGCGGcAGCuaugacauaGGAAAUCCGGu-- -3'
miRNA:   3'- -CCGCGACGCC-UUG---------CCUUUAGGCCuug -5'
9775 3' -53.9 NC_002577.1 + 137186 0.74 0.665844
Target:  5'- uGGCGCgccuucucGCGGAcgccgacGCGGccucuUCCGGAACg -3'
miRNA:   3'- -CCGCGa-------CGCCU-------UGCCuuu--AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 160152 0.74 0.665844
Target:  5'- uGGCGCgccuucucGCGGAcgccgacGCGGccucuUCCGGAACg -3'
miRNA:   3'- -CCGCGa-------CGCCU-------UGCCuuu--AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 158414 0.73 0.697376
Target:  5'- aGGCGCgUGCGGGACGaGAg--CCguGGGGCg -3'
miRNA:   3'- -CCGCG-ACGCCUUGC-CUuuaGG--CCUUG- -5'
9775 3' -53.9 NC_002577.1 + 138923 0.73 0.697376
Target:  5'- aGGCGCgUGCGGGACGaGAg--CCguGGGGCg -3'
miRNA:   3'- -CCGCG-ACGCCUUGC-CUuuaGG--CCUUG- -5'
9775 3' -53.9 NC_002577.1 + 11475 0.73 0.707447
Target:  5'- cGGCGCU-CuaAGCGGAGAUCCGGcGCc -3'
miRNA:   3'- -CCGCGAcGccUUGCCUUUAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 122139 0.73 0.707447
Target:  5'- cGGCGCU-CuaAGCGGAGAUCCGGcGCc -3'
miRNA:   3'- -CCGCGAcGccUUGCCUUUAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 76425 0.73 0.717455
Target:  5'- aGGCG--GCGGu-CGGGAGUCCGGcGCa -3'
miRNA:   3'- -CCGCgaCGCCuuGCCUUUAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 154971 0.72 0.766203
Target:  5'- aGGCGCUGCguggGGGAgGGGGggCCGGcccuACu -3'
miRNA:   3'- -CCGCGACG----CCUUgCCUUuaGGCCu---UG- -5'
9775 3' -53.9 NC_002577.1 + 44390 0.72 0.766203
Target:  5'- uGGCGgaGCGGAcaACGGcGAUUcucuaCGGAACc -3'
miRNA:   3'- -CCGCgaCGCCU--UGCCuUUAG-----GCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 142366 0.72 0.766203
Target:  5'- aGGCGCUGCguggGGGAgGGGGggCCGGcccuACu -3'
miRNA:   3'- -CCGCGACG----CCUUgCCUUuaGGCCu---UG- -5'
9775 3' -53.9 NC_002577.1 + 15706 0.72 0.766203
Target:  5'- -uUGCUGaGGAuuuCGGGAGUCUGGGACc -3'
miRNA:   3'- ccGCGACgCCUu--GCCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 136762 0.71 0.77563
Target:  5'- uGGCGacagGCGGAGgucCGGcgccuGUCCGGGACc -3'
miRNA:   3'- -CCGCga--CGCCUU---GCCuu---UAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 160575 0.71 0.77563
Target:  5'- uGGCGacagGCGGAGgucCGGcgccuGUCCGGGACc -3'
miRNA:   3'- -CCGCga--CGCCUU---GCCuu---UAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 21205 0.71 0.793176
Target:  5'- uGCGCUGCucuauccGGGACGGcAAccUCCGGAu- -3'
miRNA:   3'- cCGCGACG-------CCUUGCCuUU--AGGCCUug -5'
9775 3' -53.9 NC_002577.1 + 161891 0.71 0.803098
Target:  5'- gGGCG-UGCGGAuCGGggGggaggacuaCGGAGCg -3'
miRNA:   3'- -CCGCgACGCCUuGCCuuUag-------GCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 135447 0.71 0.803098
Target:  5'- gGGCG-UGCGGAuCGGggGggaggacuaCGGAGCg -3'
miRNA:   3'- -CCGCgACGCCUuGCCuuUag-------GCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 43939 0.71 0.811953
Target:  5'- uGGCGCccaaaaacUGUGGAACGGGAGgagcUCUGccGAGCa -3'
miRNA:   3'- -CCGCG--------ACGCCUUGCCUUU----AGGC--CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.