miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 3' -53.9 NC_002577.1 + 158186 1.11 0.004005
Target:  5'- uGGCGCUGCGGAACGGAAAUCCGGAACc -3'
miRNA:   3'- -CCGCGACGCCUUGCCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 141026 0.69 0.883344
Target:  5'- gGGgGUucgGCGGAACGGAGAcCCGuauccGAACc -3'
miRNA:   3'- -CCgCGa--CGCCUUGCCUUUaGGC-----CUUG- -5'
9775 3' -53.9 NC_002577.1 + 130361 0.69 0.89023
Target:  5'- cGUGCUGgaGGAA-GGAGAuggcgcucuacUCCGGGACg -3'
miRNA:   3'- cCGCGACg-CCUUgCCUUU-----------AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 141159 0.66 0.974068
Target:  5'- cGgGCUGCcGAcCGGgcGUCgGGGGCa -3'
miRNA:   3'- cCgCGACGcCUuGCCuuUAGgCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 142366 0.72 0.766203
Target:  5'- aGGCGCUGCguggGGGAgGGGGggCCGGcccuACu -3'
miRNA:   3'- -CCGCGACG----CCUUgCCUUuaGGCCu---UG- -5'
9775 3' -53.9 NC_002577.1 + 136762 0.71 0.77563
Target:  5'- uGGCGacagGCGGAGgucCGGcgccuGUCCGGGACc -3'
miRNA:   3'- -CCGCga--CGCCUU---GCCuu---UAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 43939 0.71 0.811953
Target:  5'- uGGCGCccaaaaacUGUGGAACGGGAGgagcUCUGccGAGCa -3'
miRNA:   3'- -CCGCG--------ACGCCUUGCCUUU----AGGC--CUUG- -5'
9775 3' -53.9 NC_002577.1 + 130400 0.7 0.837502
Target:  5'- aGGCGCUGCGGAGCGc--AUCgCGuGGu- -3'
miRNA:   3'- -CCGCGACGCCUUGCcuuUAG-GC-CUug -5'
9775 3' -53.9 NC_002577.1 + 91929 0.7 0.85282
Target:  5'- uGCGCUGCGGGAgaGAAuacaggcGUCCGGGu- -3'
miRNA:   3'- cCGCGACGCCUUgcCUU-------UAGGCCUug -5'
9775 3' -53.9 NC_002577.1 + 11680 0.69 0.883344
Target:  5'- cGGaCGCcgagagggaUGCGGAGCGcGAGAg-CGGAGCc -3'
miRNA:   3'- -CC-GCG---------ACGCCUUGC-CUUUagGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 115571 0.69 0.868904
Target:  5'- uGGCGuCUGCGGcGCGcGAAGcuguguUgCGGGGCg -3'
miRNA:   3'- -CCGC-GACGCCuUGC-CUUU------AgGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 55013 0.7 0.845652
Target:  5'- gGGCGCUGCGaauuCGGGAguggcGUUCGGuACa -3'
miRNA:   3'- -CCGCGACGCcuu-GCCUU-----UAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 160152 0.74 0.665844
Target:  5'- uGGCGCgccuucucGCGGAcgccgacGCGGccucuUCCGGAACg -3'
miRNA:   3'- -CCGCGa-------CGCCU-------UGCCuuu--AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 124446 0.69 0.876234
Target:  5'- uGGCGCggGCGG---GGGAGUCCGucGCg -3'
miRNA:   3'- -CCGCGa-CGCCuugCCUUUAGGCcuUG- -5'
9775 3' -53.9 NC_002577.1 + 138923 0.73 0.697376
Target:  5'- aGGCGCgUGCGGGACGaGAg--CCguGGGGCg -3'
miRNA:   3'- -CCGCG-ACGCCUUGC-CUuuaGG--CCUUG- -5'
9775 3' -53.9 NC_002577.1 + 134658 0.7 0.845652
Target:  5'- aGgGCUGCGGAAaccgcuccucCGGA--UCCGGuGCg -3'
miRNA:   3'- cCgCGACGCCUU----------GCCUuuAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 123785 0.69 0.883344
Target:  5'- uGGuCGCUaUGGGAUcGGGAUCCGGAAUc -3'
miRNA:   3'- -CC-GCGAcGCCUUGcCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 69063 0.69 0.89023
Target:  5'- cGCGUUgGgGGAGCGGAAAaa-GGAGCu -3'
miRNA:   3'- cCGCGA-CgCCUUGCCUUUaggCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 122139 0.73 0.707447
Target:  5'- cGGCGCU-CuaAGCGGAGAUCCGGcGCc -3'
miRNA:   3'- -CCGCGAcGccUUGCCUUUAGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 135447 0.71 0.803098
Target:  5'- gGGCG-UGCGGAuCGGggGggaggacuaCGGAGCg -3'
miRNA:   3'- -CCGCgACGCCUuGCCuuUag-------GCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.