miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 5' -62.6 NC_002577.1 + 1328 0.69 0.494199
Target:  5'- uGCGgUCCGCGGUUCccaagCGUCCUGCGu- -3'
miRNA:   3'- -UGCgGGGUGCCGAGa----GCAGGGCGUgc -5'
9775 5' -62.6 NC_002577.1 + 3034 0.67 0.597688
Target:  5'- uGCGCUCCGCaGCgccUUCGUCCCGgAg- -3'
miRNA:   3'- -UGCGGGGUGcCGa--GAGCAGGGCgUgc -5'
9775 5' -62.6 NC_002577.1 + 3150 0.66 0.662486
Target:  5'- cGCGCgUCuggacuuuaccgggGCGGCU-UCGUCCCGCgGCGu -3'
miRNA:   3'- -UGCGgGG--------------UGCCGAgAGCAGGGCG-UGC- -5'
9775 5' -62.6 NC_002577.1 + 4422 0.67 0.617011
Target:  5'- cGCGCCCCcccauacuCGGCgcgCGUaCCCGCGg- -3'
miRNA:   3'- -UGCGGGGu-------GCCGagaGCA-GGGCGUgc -5'
9775 5' -62.6 NC_002577.1 + 5409 0.68 0.55936
Target:  5'- aGCGgUCCgaGCGGCUCUCcucugauaUCCCgGCACGg -3'
miRNA:   3'- -UGCgGGG--UGCCGAGAGc-------AGGG-CGUGC- -5'
9775 5' -62.6 NC_002577.1 + 9608 0.67 0.617011
Target:  5'- gACGgagCCCGCGGUg--CGUaCCUGCACGg -3'
miRNA:   3'- -UGCg--GGGUGCCGagaGCA-GGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 10831 0.73 0.30398
Target:  5'- gACGCCCCAUcGUUCUCGUCCgCGgAUc -3'
miRNA:   3'- -UGCGGGGUGcCGAGAGCAGG-GCgUGc -5'
9775 5' -62.6 NC_002577.1 + 11554 0.67 0.588057
Target:  5'- uCGCuCCCGacggGGCUCUCGUUCgGCGa- -3'
miRNA:   3'- uGCG-GGGUg---CCGAGAGCAGGgCGUgc -5'
9775 5' -62.6 NC_002577.1 + 11888 0.71 0.391642
Target:  5'- cCGUCCC-CGGCUC-CGcUCUCGCGCu -3'
miRNA:   3'- uGCGGGGuGCCGAGaGC-AGGGCGUGc -5'
9775 5' -62.6 NC_002577.1 + 16715 0.66 0.66538
Target:  5'- -aGCCUCACGGCggcuUCUacgCGUUaCGCGCGg -3'
miRNA:   3'- ugCGGGGUGCCG----AGA---GCAGgGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 26297 0.68 0.549878
Target:  5'- uCGUgaCCGCGGCUUUCGaagCCCGCGg- -3'
miRNA:   3'- uGCGg-GGUGCCGAGAGCa--GGGCGUgc -5'
9775 5' -62.6 NC_002577.1 + 88857 0.69 0.449843
Target:  5'- aACGUCCCGCGcCUgUUG-CCCGCAUGc -3'
miRNA:   3'- -UGCGGGGUGCcGAgAGCaGGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 96683 0.66 0.664416
Target:  5'- --aCCCgACGGCcaauaggUCUCGUgUCCGCGCGc -3'
miRNA:   3'- ugcGGGgUGCCG-------AGAGCA-GGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 104699 0.72 0.338572
Target:  5'- gACGaUCCGCGGCg-UCGUCCgCGCACGc -3'
miRNA:   3'- -UGCgGGGUGCCGagAGCAGG-GCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 121726 0.71 0.391642
Target:  5'- cCGUCCC-CGGCUC-CGcUCUCGCGCu -3'
miRNA:   3'- uGCGGGGuGCCGAGaGC-AGGGCGUGc -5'
9775 5' -62.6 NC_002577.1 + 122060 0.67 0.588057
Target:  5'- uCGCuCCCGacggGGCUCUCGUUCgGCGa- -3'
miRNA:   3'- uGCG-GGGUg---CCGAGAGCAGGgCGUgc -5'
9775 5' -62.6 NC_002577.1 + 122782 0.73 0.30398
Target:  5'- gACGCCCCAUcGUUCUCGUCCgCGgAUc -3'
miRNA:   3'- -UGCGGGGUGcCGAGAGCAGG-GCgUGc -5'
9775 5' -62.6 NC_002577.1 + 124006 0.67 0.617011
Target:  5'- gACGgagCCCGCGGUg--CGUaCCUGCACGg -3'
miRNA:   3'- -UGCg--GGGUGCCGagaGCA-GGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 128205 0.68 0.55936
Target:  5'- aGCGgUCCgaGCGGCUCUCcucugauaUCCCgGCACGg -3'
miRNA:   3'- -UGCgGGG--UGCCGAGAGc-------AGGG-CGUGC- -5'
9775 5' -62.6 NC_002577.1 + 129192 0.67 0.617011
Target:  5'- cGCGCCCCcccauacuCGGCgcgCGUaCCCGCGg- -3'
miRNA:   3'- -UGCGGGGu-------GCCGagaGCA-GGGCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.