Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9775 | 5' | -62.6 | NC_002577.1 | + | 158220 | 1.07 | 0.001262 |
Target: 5'- gACGCCCCACGGCUCUCGUCCCGCACGc -3' miRNA: 3'- -UGCGGGGUGCCGAGAGCAGGGCGUGC- -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 158135 | 0.66 | 0.636375 |
Target: 5'- cCGCCaCCGC-GCUC-CcUCCCGCGCu -3' miRNA: 3'- uGCGG-GGUGcCGAGaGcAGGGCGUGc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 162585 | 0.66 | 0.655726 |
Target: 5'- cCGCgCCCGCGG-UUUCGguUCCCGgGCa -3' miRNA: 3'- uGCG-GGGUGCCgAGAGC--AGGGCgUGc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 96683 | 0.66 | 0.664416 |
Target: 5'- --aCCCgACGGCcaauaggUCUCGUgUCCGCGCGc -3' miRNA: 3'- ugcGGGgUGCCG-------AGAGCA-GGGCGUGC- -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 104699 | 0.72 | 0.338572 |
Target: 5'- gACGaUCCGCGGCg-UCGUCCgCGCACGc -3' miRNA: 3'- -UGCgGGGUGCCGagAGCAGG-GCGUGC- -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 156037 | 0.71 | 0.353188 |
Target: 5'- cUGCCCgCGCGGCUCcCGUCgCGgGCa -3' miRNA: 3'- uGCGGG-GUGCCGAGaGCAGgGCgUGc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 134887 | 0.69 | 0.476205 |
Target: 5'- aACGCgCCCGCGGg-CUCG-CCgGCGCu -3' miRNA: 3'- -UGCG-GGGUGCCgaGAGCaGGgCGUGc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 132286 | 0.69 | 0.494199 |
Target: 5'- uGCGgUCCGCGGUUCccaagCGUCCUGCGu- -3' miRNA: 3'- -UGCgGGGUGCCGAGa----GCAGGGCGUgc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 3034 | 0.67 | 0.597688 |
Target: 5'- uGCGCUCCGCaGCgccUUCGUCCCGgAg- -3' miRNA: 3'- -UGCGGGGUGcCGa--GAGCAGGGCgUgc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 4422 | 0.67 | 0.617011 |
Target: 5'- cGCGCCCCcccauacuCGGCgcgCGUaCCCGCGg- -3' miRNA: 3'- -UGCGGGGu-------GCCGagaGCA-GGGCGUgc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 122060 | 0.67 | 0.588057 |
Target: 5'- uCGCuCCCGacggGGCUCUCGUUCgGCGa- -3' miRNA: 3'- uGCG-GGGUg---CCGAGAGCAGGgCGUgc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 162081 | 0.8 | 0.099817 |
Target: 5'- gGCGgaaCCCCGCGGCUCgguugCGUUCCGCGCu -3' miRNA: 3'- -UGC---GGGGUGCCGAGa----GCAGGGCGUGc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 9608 | 0.67 | 0.617011 |
Target: 5'- gACGgagCCCGCGGUg--CGUaCCUGCACGg -3' miRNA: 3'- -UGCg--GGGUGCCGagaGCA-GGGCGUGC- -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 155996 | 0.73 | 0.284562 |
Target: 5'- gACGCCCgGuCGGCagCcCGUCCCGcCACGg -3' miRNA: 3'- -UGCGGGgU-GCCGa-GaGCAGGGC-GUGC- -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 5409 | 0.68 | 0.55936 |
Target: 5'- aGCGgUCCgaGCGGCUCUCcucugauaUCCCgGCACGg -3' miRNA: 3'- -UGCgGGG--UGCCGAGAGc-------AGGG-CGUGC- -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 134069 | 0.66 | 0.636375 |
Target: 5'- aGCGCCCgCGCGGCcggCgggcaUGUCCgGCGgGg -3' miRNA: 3'- -UGCGGG-GUGCCGa--Ga----GCAGGgCGUgC- -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 3150 | 0.66 | 0.662486 |
Target: 5'- cGCGCgUCuggacuuuaccgggGCGGCU-UCGUCCCGCgGCGu -3' miRNA: 3'- -UGCGgGG--------------UGCCGAgAGCAGGGCG-UGC- -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 122782 | 0.73 | 0.30398 |
Target: 5'- gACGCCCCAUcGUUCUCGUCCgCGgAUc -3' miRNA: 3'- -UGCGGGGUGcCGAGAGCAGG-GCgUGc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 121726 | 0.71 | 0.391642 |
Target: 5'- cCGUCCC-CGGCUC-CGcUCUCGCGCu -3' miRNA: 3'- uGCGGGGuGCCGAGaGC-AGGGCGUGc -5' |
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9775 | 5' | -62.6 | NC_002577.1 | + | 160238 | 0.67 | 0.617011 |
Target: 5'- -gGCCCCGCaaGUUCUCccgagCCCGUGCGg -3' miRNA: 3'- ugCGGGGUGc-CGAGAGca---GGGCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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