miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9777 5' -55.2 NC_002577.1 + 132459 0.68 0.818895
Target:  5'- -gGGGGGggGguugaggGGGGGAUgcgGCGCUg- -3'
miRNA:   3'- caCCUCCuuUa------CCCCUUGa--CGCGGuu -5'
9777 5' -55.2 NC_002577.1 + 134357 0.67 0.88992
Target:  5'- -cGGGGGGGggGGGGGGggGCGCg-- -3'
miRNA:   3'- caCCUCCUUuaCCCCUUgaCGCGguu -5'
9777 5' -55.2 NC_002577.1 + 136587 0.67 0.860474
Target:  5'- -cGGAGuuccAAUGGGGGGCUuccuaaaggcgGCGCCAc -3'
miRNA:   3'- caCCUCcu--UUACCCCUUGA-----------CGCGGUu -5'
9777 5' -55.2 NC_002577.1 + 136736 0.67 0.868173
Target:  5'- -aGG-GGggGUGGGGGGCcuUGUGCa-- -3'
miRNA:   3'- caCCuCCuuUACCCCUUG--ACGCGguu -5'
9777 5' -55.2 NC_002577.1 + 138240 1.06 0.004248
Target:  5'- cGUGGAGGAAAUGGGGAACUGCGCCAAa -3'
miRNA:   3'- -CACCUCCUUUACCCCUUGACGCGGUU- -5'
9777 5' -55.2 NC_002577.1 + 140504 0.73 0.57853
Target:  5'- cGUGGGGGGA--GGGGAACcGUGCgGAg -3'
miRNA:   3'- -CACCUCCUUuaCCCCUUGaCGCGgUU- -5'
9777 5' -55.2 NC_002577.1 + 140722 0.67 0.868173
Target:  5'- -gGGGGGggGUGGGGGggGCa-CGCCc- -3'
miRNA:   3'- caCCUCCuuUACCCCU--UGacGCGGuu -5'
9777 5' -55.2 NC_002577.1 + 142374 0.66 0.9214
Target:  5'- cGUGGGGGAg--GGGGGGCcgGC-CCu- -3'
miRNA:   3'- -CACCUCCUuuaCCCCUUGa-CGcGGuu -5'
9777 5' -55.2 NC_002577.1 + 142483 0.67 0.875651
Target:  5'- -cGGGGGggGgggGGGGGGggGCGCgGGu -3'
miRNA:   3'- caCCUCCuuUa--CCCCUUgaCGCGgUU- -5'
9777 5' -55.2 NC_002577.1 + 142786 0.7 0.743666
Target:  5'- uGUGGGGGAA--GGGGAACagaauUGCgGCUAAg -3'
miRNA:   3'- -CACCUCCUUuaCCCCUUG-----ACG-CGGUU- -5'
9777 5' -55.2 NC_002577.1 + 143241 0.73 0.546682
Target:  5'- -aGGGGGAGAguuUGGGGAACUcggggcccuaagaGCGCUAc -3'
miRNA:   3'- caCCUCCUUU---ACCCCUUGA-------------CGCGGUu -5'
9777 5' -55.2 NC_002577.1 + 143546 0.7 0.743666
Target:  5'- cUGGGGGAGggGGGGuAugUGUcaGCCAc -3'
miRNA:   3'- cACCUCCUUuaCCCC-UugACG--CGGUu -5'
9777 5' -55.2 NC_002577.1 + 154857 0.67 0.882902
Target:  5'- -gGGGGGGGggGGGGGGggGCGCgGGu -3'
miRNA:   3'- caCCUCCUUuaCCCCUUgaCGCGgUU- -5'
9777 5' -55.2 NC_002577.1 + 154963 0.66 0.9214
Target:  5'- cGUGGGGGAg--GGGGGGCcgGC-CCu- -3'
miRNA:   3'- -CACCUCCUuuaCCCCUUGa-CGcGGuu -5'
9777 5' -55.2 NC_002577.1 + 156615 0.67 0.868173
Target:  5'- -gGGGGGggGUGGGGGggGCa-CGCCc- -3'
miRNA:   3'- caCCUCCuuUACCCCU--UGacGCGGuu -5'
9777 5' -55.2 NC_002577.1 + 156834 0.73 0.57853
Target:  5'- cGUGGGGGGA--GGGGAACcGUGCgGAg -3'
miRNA:   3'- -CACCUCCUUuaCCCCUUGaCGCGgUU- -5'
9777 5' -55.2 NC_002577.1 + 159098 1.06 0.004248
Target:  5'- cGUGGAGGAAAUGGGGAACUGCGCCAAa -3'
miRNA:   3'- -CACCUCCUUUACCCCUUGACGCGGUU- -5'
9777 5' -55.2 NC_002577.1 + 160601 0.67 0.868173
Target:  5'- -aGG-GGggGUGGGGGGCcuUGUGCa-- -3'
miRNA:   3'- caCCuCCuuUACCCCUUG--ACGCGguu -5'
9777 5' -55.2 NC_002577.1 + 160751 0.67 0.860474
Target:  5'- -cGGAGuuccAAUGGGGGGCUuccuaaaggcgGCGCCAc -3'
miRNA:   3'- caCCUCcu--UUACCCCUUGA-----------CGCGGUu -5'
9777 5' -55.2 NC_002577.1 + 162973 0.67 0.882902
Target:  5'- -gGGGGGGGggGGGGGGC-GCGacuCCAAg -3'
miRNA:   3'- caCCUCCUUuaCCCCUUGaCGC---GGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.