Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 1155 | 0.68 | 0.818895 |
Target: 5'- -gGGGGGggGguugaggGGGGGAUgcgGCGCUg- -3' miRNA: 3'- caCCUCCuuUa------CCCCUUGa--CGCGGuu -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 1541 | 0.67 | 0.88992 |
Target: 5'- aUGGGGGggGggGGGGGAgaGgGUCGc -3' miRNA: 3'- cACCUCCuuUa-CCCCUUgaCgCGGUu -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 4253 | 0.66 | 0.9214 |
Target: 5'- -aGGGGGGuggGGGGGAUaUGCGaCCGc -3' miRNA: 3'- caCCUCCUuuaCCCCUUG-ACGC-GGUu -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 6650 | 0.68 | 0.810016 |
Target: 5'- cGUGGGGGggG-GGGGAGgcCUGaacgGCCGg -3' miRNA: 3'- -CACCUCCuuUaCCCCUU--GACg---CGGUu -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 8458 | 0.73 | 0.537536 |
Target: 5'- uGUGGGGGuguGUGGGGGugUGUGUgGGg -3' miRNA: 3'- -CACCUCCuu-UACCCCUugACGCGgUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 8493 | 0.67 | 0.882902 |
Target: 5'- -cGGGGGGGggGGGGGGgUGUGUgAGu -3' miRNA: 3'- caCCUCCUUuaCCCCUUgACGCGgUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 10538 | 0.67 | 0.860474 |
Target: 5'- -gGGGGGAAAgucGGGGGGCgacccGCGaCCGu -3' miRNA: 3'- caCCUCCUUUa--CCCCUUGa----CGC-GGUu -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 10937 | 0.68 | 0.826735 |
Target: 5'- gGUGGAagGGGGAUGGGuaccgagggcaucGAACUG-GCCGAg -3' miRNA: 3'- -CACCU--CCUUUACCC-------------CUUGACgCGGUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 11617 | 0.68 | 0.836114 |
Target: 5'- uGUGGGGGAAGggaagGGGGAGacg-GCCGAa -3' miRNA: 3'- -CACCUCCUUUa----CCCCUUgacgCGGUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 16519 | 0.66 | 0.919684 |
Target: 5'- aUGGGGGAguucgaagaugaggGcgGGGGggUUG-GCCGGg -3' miRNA: 3'- cACCUCCU--------------UuaCCCCuuGACgCGGUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 71921 | 0.68 | 0.826735 |
Target: 5'- -cGGAGGAacuAAUGGuagucaaGGAuuugGCUGUGCCGAu -3' miRNA: 3'- caCCUCCU---UUACC-------CCU----UGACGCGGUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 87219 | 0.67 | 0.878579 |
Target: 5'- -aGGcGGgcAUGGGGGGCUGUacaacacaguucgucGCCGAg -3' miRNA: 3'- caCCuCCuuUACCCCUUGACG---------------CGGUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 121996 | 0.68 | 0.836114 |
Target: 5'- uGUGGGGGAAGggaagGGGGAGacg-GCCGAa -3' miRNA: 3'- -CACCUCCUUUa----CCCCUUgacgCGGUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 122677 | 0.68 | 0.826735 |
Target: 5'- gGUGGAagGGGGAUGGGuaccgagggcaucGAACUG-GCCGAg -3' miRNA: 3'- -CACCU--CCUUUACCC-------------CUUGACgCGGUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 123076 | 0.67 | 0.860474 |
Target: 5'- -gGGGGGAAAgucGGGGGGCgacccGCGaCCGu -3' miRNA: 3'- caCCUCCUUUa--CCCCUUGa----CGC-GGUu -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 125121 | 0.67 | 0.882902 |
Target: 5'- -cGGGGGGGggGGGGGGgUGUGUgAGu -3' miRNA: 3'- caCCUCCUUuaCCCCUUgACGCGgUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 125156 | 0.73 | 0.537536 |
Target: 5'- uGUGGGGGuguGUGGGGGugUGUGUgGGg -3' miRNA: 3'- -CACCUCCuu-UACCCCUugACGCGgUU- -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 126963 | 0.68 | 0.810016 |
Target: 5'- cGUGGGGGggG-GGGGAGgcCUGaacgGCCGg -3' miRNA: 3'- -CACCUCCuuUaCCCCUU--GACg---CGGUu -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 129361 | 0.66 | 0.9214 |
Target: 5'- -aGGGGGGuggGGGGGAUaUGCGaCCGc -3' miRNA: 3'- caCCUCCUuuaCCCCUUG-ACGC-GGUu -5' |
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9777 | 5' | -55.2 | NC_002577.1 | + | 132073 | 0.67 | 0.88992 |
Target: 5'- aUGGGGGggGggGGGGGAgaGgGUCGc -3' miRNA: 3'- cACCUCCuuUa-CCCCUUgaCgCGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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