Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 159098 | 1.06 | 0.004248 |
Target: 5'- cGUGGAGGAAAUGGGGAACUGCGCCAAa -3' miRNA: 3'- -CACCUCCUUUACCCCUUGACGCGGUU- -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 136736 | 0.67 | 0.868173 |
Target: 5'- -aGG-GGggGUGGGGGGCcuUGUGCa-- -3' miRNA: 3'- caCCuCCuuUACCCCUUG--ACGCGguu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 121996 | 0.68 | 0.836114 |
Target: 5'- uGUGGGGGAAGggaagGGGGAGacg-GCCGAa -3' miRNA: 3'- -CACCUCCUUUa----CCCCUUgacgCGGUU- -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 122677 | 0.68 | 0.826735 |
Target: 5'- gGUGGAagGGGGAUGGGuaccgagggcaucGAACUG-GCCGAg -3' miRNA: 3'- -CACCU--CCUUUACCC-------------CUUGACgCGGUU- -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 126963 | 0.68 | 0.810016 |
Target: 5'- cGUGGGGGggG-GGGGAGgcCUGaacgGCCGg -3' miRNA: 3'- -CACCUCCuuUaCCCCUU--GACg---CGGUu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 143546 | 0.7 | 0.743666 |
Target: 5'- cUGGGGGAGggGGGGuAugUGUcaGCCAc -3' miRNA: 3'- cACCUCCUUuaCCCC-UugACG--CGGUu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 129361 | 0.66 | 0.9214 |
Target: 5'- -aGGGGGGuggGGGGGAUaUGCGaCCGc -3' miRNA: 3'- caCCUCCUuuaCCCCUUG-ACGC-GGUu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 1541 | 0.67 | 0.88992 |
Target: 5'- aUGGGGGggGggGGGGGAgaGgGUCGc -3' miRNA: 3'- cACCUCCuuUa-CCCCUUgaCgCGGUu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 154857 | 0.67 | 0.882902 |
Target: 5'- -gGGGGGGGggGGGGGGggGCGCgGGu -3' miRNA: 3'- caCCUCCUUuaCCCCUUgaCGCGgUU- -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 136587 | 0.67 | 0.860474 |
Target: 5'- -cGGAGuuccAAUGGGGGGCUuccuaaaggcgGCGCCAc -3' miRNA: 3'- caCCUCcu--UUACCCCUUGA-----------CGCGGUu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 132459 | 0.68 | 0.818895 |
Target: 5'- -gGGGGGggGguugaggGGGGGAUgcgGCGCUg- -3' miRNA: 3'- caCCUCCuuUa------CCCCUUGa--CGCGGuu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 8458 | 0.73 | 0.537536 |
Target: 5'- uGUGGGGGuguGUGGGGGugUGUGUgGGg -3' miRNA: 3'- -CACCUCCuu-UACCCCUugACGCGgUU- -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 162973 | 0.67 | 0.882902 |
Target: 5'- -gGGGGGGGggGGGGGGC-GCGacuCCAAg -3' miRNA: 3'- caCCUCCUUuaCCCCUUGaCGC---GGUU- -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 143241 | 0.73 | 0.546682 |
Target: 5'- -aGGGGGAGAguuUGGGGAACUcggggcccuaagaGCGCUAc -3' miRNA: 3'- caCCUCCUUU---ACCCCUUGA-------------CGCGGUu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 10538 | 0.67 | 0.860474 |
Target: 5'- -gGGGGGAAAgucGGGGGGCgacccGCGaCCGu -3' miRNA: 3'- caCCUCCUUUa--CCCCUUGa----CGC-GGUu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 125121 | 0.67 | 0.882902 |
Target: 5'- -cGGGGGGGggGGGGGGgUGUGUgAGu -3' miRNA: 3'- caCCUCCUUuaCCCCUUgACGCGgUU- -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 142374 | 0.66 | 0.9214 |
Target: 5'- cGUGGGGGAg--GGGGGGCcgGC-CCu- -3' miRNA: 3'- -CACCUCCUuuaCCCCUUGa-CGcGGuu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 140504 | 0.73 | 0.57853 |
Target: 5'- cGUGGGGGGA--GGGGAACcGUGCgGAg -3' miRNA: 3'- -CACCUCCUUuaCCCCUUGaCGCGgUU- -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 140722 | 0.67 | 0.868173 |
Target: 5'- -gGGGGGggGUGGGGGggGCa-CGCCc- -3' miRNA: 3'- caCCUCCuuUACCCCU--UGacGCGGuu -5' |
|||||||
9777 | 5' | -55.2 | NC_002577.1 | + | 71921 | 0.68 | 0.826735 |
Target: 5'- -cGGAGGAacuAAUGGuagucaaGGAuuugGCUGUGCCGAu -3' miRNA: 3'- caCCUCCU---UUACC-------CCU----UGACGCGGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home