miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9778 3' -54 NC_002577.1 + 161227 1.1 0.004272
Target:  5'- gUGGAAGAAGCCGUCCGCUACGUCAGGu -3'
miRNA:   3'- -ACCUUCUUCGGCAGGCGAUGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 136111 1.1 0.004272
Target:  5'- gUGGAAGAAGCCGUCCGCUACGUCAGGu -3'
miRNA:   3'- -ACCUUCUUCGGCAGGCGAUGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 139648 0.76 0.532322
Target:  5'- cUGGcuGGA-CCGacUCCGCUGCGUCAGGc -3'
miRNA:   3'- -ACCuuCUUcGGC--AGGCGAUGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 157689 0.76 0.532322
Target:  5'- cUGGcuGGA-CCGacUCCGCUGCGUCAGGc -3'
miRNA:   3'- -ACCuuCUUcGGC--AGGCGAUGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 158279 0.75 0.613105
Target:  5'- aGGcaccucGAAGCCGggCCGC-ACGUCGGGg -3'
miRNA:   3'- aCCuu----CUUCGGCa-GGCGaUGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 139059 0.75 0.613105
Target:  5'- aGGcaccucGAAGCCGggCCGC-ACGUCGGGg -3'
miRNA:   3'- aCCuu----CUUCGGCa-GGCGaUGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 11670 0.74 0.633584
Target:  5'- gGGGAGgcGCCGUCCGaggcCGcCGGGg -3'
miRNA:   3'- aCCUUCuuCGGCAGGCgau-GCaGUCC- -5'
9778 3' -54 NC_002577.1 + 121943 0.74 0.633584
Target:  5'- gGGGAGgcGCCGUCCGaggcCGcCGGGg -3'
miRNA:   3'- aCCUUCuuCGGCAGGCgau-GCaGUCC- -5'
9778 3' -54 NC_002577.1 + 131723 0.72 0.763522
Target:  5'- aGGGuAGggGCUggGUCUGUUACGggCAGGg -3'
miRNA:   3'- aCCU-UCuuCGG--CAGGCGAUGCa-GUCC- -5'
9778 3' -54 NC_002577.1 + 1891 0.71 0.800469
Target:  5'- aGGGuAGggGCUgggGUCUGUUACGggCAGGg -3'
miRNA:   3'- aCCU-UCuuCGG---CAGGCGAUGCa-GUCC- -5'
9778 3' -54 NC_002577.1 + 63809 0.71 0.818062
Target:  5'- aUGGAc-GGGCCGUCCGC-GCGUCu-- -3'
miRNA:   3'- -ACCUucUUCGGCAGGCGaUGCAGucc -5'
9778 3' -54 NC_002577.1 + 8923 0.7 0.826609
Target:  5'- gGGGAGGAGCCGUuaGCUcacCGgccccgCGGGa -3'
miRNA:   3'- aCCUUCUUCGGCAggCGAu--GCa-----GUCC- -5'
9778 3' -54 NC_002577.1 + 124691 0.7 0.826609
Target:  5'- gGGGAGGAGCCGUuaGCUcacCGgccccgCGGGa -3'
miRNA:   3'- aCCUUCUUCGGCAggCGAu--GCa-----GUCC- -5'
9778 3' -54 NC_002577.1 + 158083 0.69 0.873918
Target:  5'- uUGGAggcauAGAAGCCG-CCGCgGCGcCGGc -3'
miRNA:   3'- -ACCU-----UCUUCGGCaGGCGaUGCaGUCc -5'
9778 3' -54 NC_002577.1 + 139255 0.69 0.873918
Target:  5'- uUGGAggcauAGAAGCCG-CCGCgGCGcCGGc -3'
miRNA:   3'- -ACCU-----UCUUCGGCaGGCGaUGCaGUCc -5'
9778 3' -54 NC_002577.1 + 9159 0.69 0.894731
Target:  5'- cGGggGAGuCCGUCgCGUaa-GUCGGGg -3'
miRNA:   3'- aCCuuCUUcGGCAG-GCGaugCAGUCC- -5'
9778 3' -54 NC_002577.1 + 124455 0.69 0.894731
Target:  5'- cGGggGAGuCCGUCgCGUaa-GUCGGGg -3'
miRNA:   3'- aCCuuCUUcGGCAG-GCGaugCAGUCC- -5'
9778 3' -54 NC_002577.1 + 156184 0.68 0.907465
Target:  5'- cGGGAcGGGCUG-CCGaccggGCGUCGGGg -3'
miRNA:   3'- aCCUUcUUCGGCaGGCga---UGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 141154 0.68 0.907465
Target:  5'- cGGGAcGGGCUG-CCGaccggGCGUCGGGg -3'
miRNA:   3'- aCCUUcUUCGGCaGGCga---UGCAGUCC- -5'
9778 3' -54 NC_002577.1 + 103717 0.68 0.913479
Target:  5'- aUGGuaccGGggGCgCG-CCGCUAggggagacuuuCGUCGGGg -3'
miRNA:   3'- -ACCu---UCuuCG-GCaGGCGAU-----------GCAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.