Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9778 | 3' | -54 | NC_002577.1 | + | 124691 | 0.7 | 0.826609 |
Target: 5'- gGGGAGGAGCCGUuaGCUcacCGgccccgCGGGa -3' miRNA: 3'- aCCUUCUUCGGCAggCGAu--GCa-----GUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 131723 | 0.72 | 0.763522 |
Target: 5'- aGGGuAGggGCUggGUCUGUUACGggCAGGg -3' miRNA: 3'- aCCU-UCuuCGG--CAGGCGAUGCa-GUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 121943 | 0.74 | 0.633584 |
Target: 5'- gGGGAGgcGCCGUCCGaggcCGcCGGGg -3' miRNA: 3'- aCCUUCuuCGGCAGGCgau-GCaGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 139059 | 0.75 | 0.613105 |
Target: 5'- aGGcaccucGAAGCCGggCCGC-ACGUCGGGg -3' miRNA: 3'- aCCuu----CUUCGGCa-GGCGaUGCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 157689 | 0.76 | 0.532322 |
Target: 5'- cUGGcuGGA-CCGacUCCGCUGCGUCAGGc -3' miRNA: 3'- -ACCuuCUUcGGC--AGGCGAUGCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 161227 | 1.1 | 0.004272 |
Target: 5'- gUGGAAGAAGCCGUCCGCUACGUCAGGu -3' miRNA: 3'- -ACCUUCUUCGGCAGGCGAUGCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 42727 | 0.67 | 0.956906 |
Target: 5'- aGGAAccAGGCCGagCCGCU--GUCAGGu -3' miRNA: 3'- aCCUUc-UUCGGCa-GGCGAugCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 136984 | 0.67 | 0.95302 |
Target: 5'- cGGAAGAGGCCGcgUCgGCguccGCGagaAGGc -3' miRNA: 3'- aCCUUCUUCGGC--AGgCGa---UGCag-UCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 136233 | 0.67 | 0.935153 |
Target: 5'- gGGggGcGAGCCGggcgCCGgUACGcaaaaCAGGu -3' miRNA: 3'- aCCuuC-UUCGGCa---GGCgAUGCa----GUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 141154 | 0.68 | 0.907465 |
Target: 5'- cGGGAcGGGCUG-CCGaccggGCGUCGGGg -3' miRNA: 3'- aCCUUcUUCGGCaGGCga---UGCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 139255 | 0.69 | 0.873918 |
Target: 5'- uUGGAggcauAGAAGCCG-CCGCgGCGcCGGc -3' miRNA: 3'- -ACCU-----UCUUCGGCaGGCGaUGCaGUCc -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 16671 | 0.66 | 0.960568 |
Target: 5'- aGGAAccguAGCCGUuuGUa--GUCAGGg -3' miRNA: 3'- aCCUUcu--UCGGCAggCGaugCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 124455 | 0.69 | 0.894731 |
Target: 5'- cGGggGAGuCCGUCgCGUaa-GUCGGGg -3' miRNA: 3'- aCCuuCUUcGGCAG-GCGaugCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 161817 | 0.67 | 0.948905 |
Target: 5'- cUGGAAGGggacGGCgGUCCGCcggagaccacCGUcCAGGa -3' miRNA: 3'- -ACCUUCU----UCGgCAGGCGau--------GCA-GUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 121905 | 0.66 | 0.973059 |
Target: 5'- gGGAGGGuAGCCGgCCGgcCUGCaGUuCGGGa -3' miRNA: 3'- aCCUUCU-UCGGCaGGC--GAUG-CA-GUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 63809 | 0.71 | 0.818062 |
Target: 5'- aUGGAc-GGGCCGUCCGC-GCGUCu-- -3' miRNA: 3'- -ACCUucUUCGGCAGGCGaUGCAGucc -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 136111 | 1.1 | 0.004272 |
Target: 5'- gUGGAAGAAGCCGUCCGCUACGUCAGGu -3' miRNA: 3'- -ACCUUCUUCGGCAGGCGAUGCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 139648 | 0.76 | 0.532322 |
Target: 5'- cUGGcuGGA-CCGacUCCGCUGCGUCAGGc -3' miRNA: 3'- -ACCuuCUUcGGC--AGGCGAUGCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 158279 | 0.75 | 0.613105 |
Target: 5'- aGGcaccucGAAGCCGggCCGC-ACGUCGGGg -3' miRNA: 3'- aCCuu----CUUCGGCa-GGCGaUGCAGUCC- -5' |
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9778 | 3' | -54 | NC_002577.1 | + | 11670 | 0.74 | 0.633584 |
Target: 5'- gGGGAGgcGCCGUCCGaggcCGcCGGGg -3' miRNA: 3'- aCCUUCuuCGGCAGGCgau-GCaGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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