miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9778 5' -59.3 NC_002577.1 + 116572 0.66 0.812648
Target:  5'- aCUCGCCUgGCGGgcuCCAGUGCUUa-UCa -3'
miRNA:   3'- -GAGCGGGgCGUC---GGUUACGAGgcAGg -5'
9778 5' -59.3 NC_002577.1 + 117256 0.67 0.759249
Target:  5'- aUCGCUCCGuUAGCaauUGaCgugCCGUCCg -3'
miRNA:   3'- gAGCGGGGC-GUCGguuAC-Ga--GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 122464 0.7 0.534502
Target:  5'- gUCGUUCCGCuGGCCg--GCccgCCGUCCg -3'
miRNA:   3'- gAGCGGGGCG-UCGGuuaCGa--GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 123511 0.67 0.711755
Target:  5'- -aCGCCgCGaC-GCCGcgGC-CCGUCCa -3'
miRNA:   3'- gaGCGGgGC-GuCGGUuaCGaGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 128703 0.67 0.739564
Target:  5'- gUCGgCgCGCgAGCgAAgcgaaccgagcucUGCUCCGUCCu -3'
miRNA:   3'- gAGCgGgGCG-UCGgUU-------------ACGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 128748 0.66 0.795383
Target:  5'- -aCGgCgCGCGcGCCGAUGCUCgG-CCg -3'
miRNA:   3'- gaGCgGgGCGU-CGGUUACGAGgCaGG- -5'
9778 5' -59.3 NC_002577.1 + 129117 0.68 0.692252
Target:  5'- -aCGUaCCGCGcGCCAu--CUCCGUCCa -3'
miRNA:   3'- gaGCGgGGCGU-CGGUuacGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 130578 0.67 0.711755
Target:  5'- -gCGCUCCGCAGCgc---CUUCGUCCc -3'
miRNA:   3'- gaGCGGGGCGUCGguuacGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 130649 0.73 0.416117
Target:  5'- -aCGCUUCGCGcCCAGU-CUCCGUCCa -3'
miRNA:   3'- gaGCGGGGCGUcGGUUAcGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 132460 0.69 0.642804
Target:  5'- -cCGCggaCCGCAGCCuuUGCgucgCCG-CCg -3'
miRNA:   3'- gaGCGg--GGCGUCGGuuACGa---GGCaGG- -5'
9778 5' -59.3 NC_002577.1 + 134070 0.69 0.622915
Target:  5'- -gCGCCCgCGCGGCCGGcggGCa-UGUCCg -3'
miRNA:   3'- gaGCGGG-GCGUCGGUUa--CGagGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 134673 0.66 0.812648
Target:  5'- gCUC-CUCCGgAuCCGGUGCggccCCGUCCg -3'
miRNA:   3'- -GAGcGGGGCgUcGGUUACGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 135960 0.66 0.803225
Target:  5'- uUCGCcgcgaaaacCCCGCGGCCGgcgacaucagucuGUGCUgcggaagcaaCGUCCg -3'
miRNA:   3'- gAGCG---------GGGCGUCGGU-------------UACGAg---------GCAGG- -5'
9778 5' -59.3 NC_002577.1 + 136077 1.11 0.001072
Target:  5'- uCUCGCCCCGCAGCCAAUGCUCCGUCCg -3'
miRNA:   3'- -GAGCGGGGCGUCGGUUACGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 136087 0.66 0.786538
Target:  5'- -aCGCCggCCGCGGUCAGcGCcgaaaCGUCCg -3'
miRNA:   3'- gaGCGG--GGCGUCGGUUaCGag---GCAGG- -5'
9778 5' -59.3 NC_002577.1 + 136270 0.71 0.505931
Target:  5'- -gCGCUgaCCGCGGCCGgcgucAUGUUCCuGUCCc -3'
miRNA:   3'- gaGCGG--GGCGUCGGU-----UACGAGG-CAGG- -5'
9778 5' -59.3 NC_002577.1 + 136596 0.66 0.781167
Target:  5'- aCUC-CCUCGCAcGUCAGcagaagcccagacacUGCUgCGUCCg -3'
miRNA:   3'- -GAGcGGGGCGU-CGGUU---------------ACGAgGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 137455 0.66 0.777562
Target:  5'- gCUCGUUCaGCGGCCGGguagacGCgaaaCCGUCCc -3'
miRNA:   3'- -GAGCGGGgCGUCGGUUa-----CGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 138273 0.72 0.442065
Target:  5'- aUgGCgCCCGcCGGCCGcgGCcgcgCCGUCCu -3'
miRNA:   3'- gAgCG-GGGC-GUCGGUuaCGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 138461 0.66 0.795383
Target:  5'- -gCGCggCCGCGGCCGGcggGCgccaucaCCGUCCu -3'
miRNA:   3'- gaGCGg-GGCGUCGGUUa--CGa------GGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.