Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9778 | 5' | -59.3 | NC_002577.1 | + | 1153 | 0.69 | 0.642804 |
Target: 5'- -cCGCggaCCGCAGCCuuUGCgucgCCG-CCg -3' miRNA: 3'- gaGCGg--GGCGUCGGuuACGa---GGCaGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 2965 | 0.73 | 0.416117 |
Target: 5'- -aCGCUUCGCGcCCAGU-CUCCGUCCa -3' miRNA: 3'- gaGCGGGGCGUcGGUUAcGAGGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 3035 | 0.67 | 0.711755 |
Target: 5'- -gCGCUCCGCAGCgc---CUUCGUCCc -3' miRNA: 3'- gaGCGGGGCGUCGguuacGAGGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 4497 | 0.68 | 0.692252 |
Target: 5'- -aCGUaCCGCGcGCCAu--CUCCGUCCa -3' miRNA: 3'- gaGCGgGGCGU-CGGUuacGAGGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 4866 | 0.66 | 0.795383 |
Target: 5'- -aCGgCgCGCGcGCCGAUGCUCgG-CCg -3' miRNA: 3'- gaGCgGgGCGU-CGGUUACGAGgCaGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 4911 | 0.67 | 0.739564 |
Target: 5'- gUCGgCgCGCgAGCgAAgcgaaccgagcucUGCUCCGUCCu -3' miRNA: 3'- gAGCgGgGCG-UCGgUU-------------ACGAGGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 5267 | 0.69 | 0.603052 |
Target: 5'- aUCGCCCCGCAuCCGAcGCcucuaccuccccUuuGUCCc -3' miRNA: 3'- gAGCGGGGCGUcGGUUaCG------------AggCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 10103 | 0.67 | 0.711755 |
Target: 5'- -aCGCCgCGaC-GCCGcgGC-CCGUCCa -3' miRNA: 3'- gaGCGGgGC-GuCGGUuaCGaGGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 11150 | 0.7 | 0.534502 |
Target: 5'- gUCGUUCCGCuGGCCg--GCccgCCGUCCg -3' miRNA: 3'- gAGCGGGGCG-UCGGuuaCGa--GGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 18362 | 0.69 | 0.612977 |
Target: 5'- -cCGUCacuuaCGC-GCCAAUGCUCCaGUCUa -3' miRNA: 3'- gaGCGGg----GCGuCGGUUACGAGG-CAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 48672 | 0.71 | 0.515385 |
Target: 5'- --aGUCCCGCGGCgAcucAUGCgCCGUCUg -3' miRNA: 3'- gagCGGGGCGUCGgU---UACGaGGCAGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 54843 | 0.69 | 0.63286 |
Target: 5'- aCUUGCCgacgCCGCAGCCGAUgagGCUCaaaauGUCg -3' miRNA: 3'- -GAGCGG----GGCGUCGGUUA---CGAGg----CAGg -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 59832 | 0.67 | 0.749929 |
Target: 5'- cCUUGUCCCGUuugcGGCgAGaGCUCCGUa- -3' miRNA: 3'- -GAGCGGGGCG----UCGgUUaCGAGGCAgg -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 60409 | 0.67 | 0.731004 |
Target: 5'- gUCGCCCCGC--CCGAgGCcgCCG-CCg -3' miRNA: 3'- gAGCGGGGCGucGGUUaCGa-GGCaGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 67150 | 0.66 | 0.768462 |
Target: 5'- aUCGCaucCUCGCAGUCAuUGCUCUuggCCg -3' miRNA: 3'- gAGCG---GGGCGUCGGUuACGAGGca-GG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 78991 | 0.68 | 0.66266 |
Target: 5'- -aCGaaCCCCGCGGCCGGucuguUGUUCgCGUCa -3' miRNA: 3'- gaGC--GGGGCGUCGGUU-----ACGAG-GCAGg -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 93488 | 0.67 | 0.759249 |
Target: 5'- --aGCCCCGCuGCCGAcuUUCCG-CUa -3' miRNA: 3'- gagCGGGGCGuCGGUUacGAGGCaGG- -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 101745 | 0.7 | 0.534502 |
Target: 5'- -cCGCCCUGCAGCCAuaccGCauacCCGUUa -3' miRNA: 3'- gaGCGGGGCGUCGGUua--CGa---GGCAGg -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 103892 | 0.68 | 0.65274 |
Target: 5'- aUCGCCgCGCAGUUccuguAUGUUUCGUCg -3' miRNA: 3'- gAGCGGgGCGUCGGu----UACGAGGCAGg -5' |
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9778 | 5' | -59.3 | NC_002577.1 | + | 115403 | 0.72 | 0.459862 |
Target: 5'- cCUCGucaugagcuCCCCGCcGCCGAUGCUCUccCCu -3' miRNA: 3'- -GAGC---------GGGGCGuCGGUUACGAGGcaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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