miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9778 5' -59.3 NC_002577.1 + 161261 1.11 0.001072
Target:  5'- uCUCGCCCCGCAGCCAAUGCUCCGUCCg -3'
miRNA:   3'- -GAGCGGGGCGUCGGUUACGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 136077 1.11 0.001072
Target:  5'- uCUCGCCCCGCAGCCAAUGCUCCGUCCg -3'
miRNA:   3'- -GAGCGGGGCGUCGGUUACGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 130649 0.73 0.416117
Target:  5'- -aCGCUUCGCGcCCAGU-CUCCGUCCa -3'
miRNA:   3'- gaGCGGGGCGUcGGUUAcGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 2965 0.73 0.416117
Target:  5'- -aCGCUUCGCGcCCAGU-CUCCGUCCa -3'
miRNA:   3'- gaGCGGGGCGUcGGUUAcGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 138273 0.72 0.442065
Target:  5'- aUgGCgCCCGcCGGCCGcgGCcgcgCCGUCCu -3'
miRNA:   3'- gAgCG-GGGC-GUCGGUuaCGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 159065 0.72 0.442065
Target:  5'- aUgGCgCCCGcCGGCCGcgGCcgcgCCGUCCu -3'
miRNA:   3'- gAgCG-GGGC-GUCGGUuaCGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 115403 0.72 0.459862
Target:  5'- cCUCGucaugagcuCCCCGCcGCCGAUGCUCUccCCu -3'
miRNA:   3'- -GAGC---------GGGGCGuCGGUUACGAGGcaGG- -5'
9778 5' -59.3 NC_002577.1 + 155796 0.72 0.468903
Target:  5'- -cCGCCCCuacacacaccaCAGCCAcgGCUCCGgcagugCCg -3'
miRNA:   3'- gaGCGGGGc----------GUCGGUuaCGAGGCa-----GG- -5'
9778 5' -59.3 NC_002577.1 + 141542 0.72 0.468903
Target:  5'- -cCGCCCCuacacacaccaCAGCCAcgGCUCCGgcagugCCg -3'
miRNA:   3'- gaGCGGGGc----------GUCGGUuaCGAGGCa-----GG- -5'
9778 5' -59.3 NC_002577.1 + 136270 0.71 0.505931
Target:  5'- -gCGCUgaCCGCGGCCGgcgucAUGUUCCuGUCCc -3'
miRNA:   3'- gaGCGG--GGCGUCGGU-----UACGAGG-CAGG- -5'
9778 5' -59.3 NC_002577.1 + 161068 0.71 0.505931
Target:  5'- -gCGCUgaCCGCGGCCGgcgucAUGUUCCuGUCCc -3'
miRNA:   3'- gaGCGG--GGCGUCGGU-----UACGAGG-CAGG- -5'
9778 5' -59.3 NC_002577.1 + 48672 0.71 0.515385
Target:  5'- --aGUCCCGCGGCgAcucAUGCgCCGUCUg -3'
miRNA:   3'- gagCGGGGCGUCGgU---UACGaGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 122464 0.7 0.534502
Target:  5'- gUCGUUCCGCuGGCCg--GCccgCCGUCCg -3'
miRNA:   3'- gAGCGGGGCG-UCGGuuaCGa--GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 101745 0.7 0.534502
Target:  5'- -cCGCCCUGCAGCCAuaccGCauacCCGUUa -3'
miRNA:   3'- gaGCGGGGCGUCGGUua--CGa---GGCAGg -5'
9778 5' -59.3 NC_002577.1 + 11150 0.7 0.534502
Target:  5'- gUCGUUCCGCuGGCCg--GCccgCCGUCCg -3'
miRNA:   3'- gAGCGGGGCG-UCGGuuaCGa--GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 5267 0.69 0.603052
Target:  5'- aUCGCCCCGCAuCCGAcGCcucuaccuccccUuuGUCCc -3'
miRNA:   3'- gAGCGGGGCGUcGGUUaCG------------AggCAGG- -5'
9778 5' -59.3 NC_002577.1 + 18362 0.69 0.612977
Target:  5'- -cCGUCacuuaCGC-GCCAAUGCUCCaGUCUa -3'
miRNA:   3'- gaGCGGg----GCGuCGGUUACGAGG-CAGG- -5'
9778 5' -59.3 NC_002577.1 + 134070 0.69 0.622915
Target:  5'- -gCGCCCgCGCGGCCGGcggGCa-UGUCCg -3'
miRNA:   3'- gaGCGGG-GCGUCGGUUa--CGagGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 163258 0.69 0.622915
Target:  5'- -gCGCCCgCGCGGCCGGcggGCa-UGUCCg -3'
miRNA:   3'- gaGCGGG-GCGUCGGUUa--CGagGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 54843 0.69 0.63286
Target:  5'- aCUUGCCgacgCCGCAGCCGAUgagGCUCaaaauGUCg -3'
miRNA:   3'- -GAGCGG----GGCGUCGGUUA---CGAGg----CAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.