Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9779 | 3' | -60 | NC_002577.1 | + | 135951 | 1.06 | 0.001832 |
Target: 5'- aAAACCCCGCGGCCGGCGACAUCAGUCu -3' miRNA: 3'- -UUUGGGGCGCCGGCCGCUGUAGUCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 161387 | 1.06 | 0.001832 |
Target: 5'- aAAACCCCGCGGCCGGCGACAUCAGUCu -3' miRNA: 3'- -UUUGGGGCGCCGGCCGCUGUAGUCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 78992 | 0.79 | 0.13968 |
Target: 5'- cGAACCCCGCGGCCGGUcuguuguucGCGUCAG-Ca -3' miRNA: 3'- -UUUGGGGCGCCGGCCGc--------UGUAGUCaG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 162084 | 0.76 | 0.239461 |
Target: 5'- gGAACCCCGCGGCuCGGUuGCGUUccgcgcuguuAGUCg -3' miRNA: 3'- -UUUGGGGCGCCG-GCCGcUGUAG----------UCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 135244 | 0.76 | 0.239461 |
Target: 5'- gGAACCCCGCGGCuCGGUuGCGUUccgcgcuguuAGUCg -3' miRNA: 3'- -UUUGGGGCGCCG-GCCGcUGUAG----------UCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 134071 | 0.74 | 0.30184 |
Target: 5'- -cGCCCgCGCGGCCGGCgGGCAU--GUCc -3' miRNA: 3'- uuUGGG-GCGCCGGCCG-CUGUAguCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 163257 | 0.74 | 0.301841 |
Target: 5'- -cGCCCgCGCGGCCGGCgGGCAU--GUCc -3' miRNA: 3'- uuUGGG-GCGCCGGCCG-CUGUAguCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 122839 | 0.73 | 0.352528 |
Target: 5'- cGACCCCGC-GUCGGCGACG-CGGcCg -3' miRNA: 3'- uUUGGGGCGcCGGCCGCUGUaGUCaG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 101742 | 0.73 | 0.352529 |
Target: 5'- ---aCCCGCGGCUaagggaGGUGAC-UCAGUCg -3' miRNA: 3'- uuugGGGCGCCGG------CCGCUGuAGUCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 10774 | 0.73 | 0.352529 |
Target: 5'- cGACCCCGC-GUCGGCGACG-CGGcCg -3' miRNA: 3'- uUUGGGGCGcCGGCCGCUGUaGUCaG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 138456 | 0.71 | 0.461572 |
Target: 5'- ----gCCGCGGCCGGCGGgcgcCAUCAccGUCc -3' miRNA: 3'- uuuggGGCGCCGGCCGCU----GUAGU--CAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 137309 | 0.71 | 0.461572 |
Target: 5'- aAGACCCCGCucGGCCuuGGCGAUGcccUgGGUCg -3' miRNA: 3'- -UUUGGGGCG--CCGG--CCGCUGU---AgUCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 160029 | 0.71 | 0.461572 |
Target: 5'- aAGACCCCGCucGGCCuuGGCGAUGcccUgGGUCg -3' miRNA: 3'- -UUUGGGGCG--CCGG--CCGCUGU---AgUCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 158881 | 0.71 | 0.461572 |
Target: 5'- ----gCCGCGGCCGGCGGgcgcCAUCAccGUCc -3' miRNA: 3'- uuuggGGCGCCGGCCGCU----GUAGU--CAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 38535 | 0.7 | 0.498561 |
Target: 5'- -cGCCCgGCgGGCCGGCGACGaaucuaUUAGa- -3' miRNA: 3'- uuUGGGgCG-CCGGCCGCUGU------AGUCag -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 6938 | 0.68 | 0.605869 |
Target: 5'- --uCCCCGUuuGGCCGGUGG-AUgAGUCg -3' miRNA: 3'- uuuGGGGCG--CCGGCCGCUgUAgUCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 126676 | 0.68 | 0.605869 |
Target: 5'- --uCCCCGUuuGGCCGGUGG-AUgAGUCg -3' miRNA: 3'- uuuGGGGCG--CCGGCCGCUgUAgUCAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 159036 | 0.68 | 0.625863 |
Target: 5'- --cCUCCGCGGCCG-CGGCcgCGGcCu -3' miRNA: 3'- uuuGGGGCGCCGGCcGCUGuaGUCaG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 53618 | 0.68 | 0.625863 |
Target: 5'- aGAACUCUaGCGGCCGGCGu--UCGauGUCa -3' miRNA: 3'- -UUUGGGG-CGCCGGCCGCuguAGU--CAG- -5' |
|||||||
9779 | 3' | -60 | NC_002577.1 | + | 138302 | 0.68 | 0.625863 |
Target: 5'- --cCUCCGCGGCCG-CGGCcgCGGcCu -3' miRNA: 3'- uuuGGGGCGCCGGCcGCUGuaGUCaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home