Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9779 | 3' | -60 | NC_002577.1 | + | 6938 | 0.68 | 0.605869 |
Target: 5'- --uCCCCGUuuGGCCGGUGG-AUgAGUCg -3' miRNA: 3'- uuuGGGGCG--CCGGCCGCUgUAgUCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 10701 | 0.66 | 0.753464 |
Target: 5'- cGGCCCCGCaccCgCGGCGAgGUCGGa- -3' miRNA: 3'- uUUGGGGCGcc-G-GCCGCUgUAGUCag -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 10774 | 0.73 | 0.352529 |
Target: 5'- cGACCCCGC-GUCGGCGACG-CGGcCg -3' miRNA: 3'- uUUGGGGCGcCGGCCGCUGUaGUCaG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 38535 | 0.7 | 0.498561 |
Target: 5'- -cGCCCgGCgGGCCGGCGACGaaucuaUUAGa- -3' miRNA: 3'- uuUGGGgCG-CCGGCCGCUGU------AGUCag -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 45427 | 0.66 | 0.762802 |
Target: 5'- --uUCCCGUagaggcaaGGCCGGCGGguUC-GUCa -3' miRNA: 3'- uuuGGGGCG--------CCGGCCGCUguAGuCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 53618 | 0.68 | 0.625863 |
Target: 5'- aGAACUCUaGCGGCCGGCGu--UCGauGUCa -3' miRNA: 3'- -UUUGGGG-CGCCGGCCGCuguAGU--CAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 75129 | 0.66 | 0.762802 |
Target: 5'- aAAACCUCGCGaCgCGGCGucACGUuucCAGUCg -3' miRNA: 3'- -UUUGGGGCGCcG-GCCGC--UGUA---GUCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 77930 | 0.66 | 0.724869 |
Target: 5'- --uCCCCGCgGGCUGuGaCGACGUCA-UCg -3' miRNA: 3'- uuuGGGGCG-CCGGC-C-GCUGUAGUcAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 78992 | 0.79 | 0.13968 |
Target: 5'- cGAACCCCGCGGCCGGUcuguuguucGCGUCAG-Ca -3' miRNA: 3'- -UUUGGGGCGCCGGCCGc--------UGUAGUCaG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 101742 | 0.73 | 0.352529 |
Target: 5'- ---aCCCGCGGCUaagggaGGUGAC-UCAGUCg -3' miRNA: 3'- uuugGGGCGCCGG------CCGCUGuAGUCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 122839 | 0.73 | 0.352528 |
Target: 5'- cGACCCCGC-GUCGGCGACG-CGGcCg -3' miRNA: 3'- uUUGGGGCGcCGGCCGCUGUaGUCaG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 122912 | 0.66 | 0.753464 |
Target: 5'- cGGCCCCGCaccCgCGGCGAgGUCGGa- -3' miRNA: 3'- uUUGGGGCGcc-G-GCCGCUgUAGUCag -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 126676 | 0.68 | 0.605869 |
Target: 5'- --uCCCCGUuuGGCCGGUGG-AUgAGUCg -3' miRNA: 3'- uuuGGGGCG--CCGGCCGCUgUAgUCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 134071 | 0.74 | 0.30184 |
Target: 5'- -cGCCCgCGCGGCCGGCgGGCAU--GUCc -3' miRNA: 3'- uuUGGG-GCGCCGGCCG-CUGUAguCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 134127 | 0.67 | 0.675797 |
Target: 5'- uGGCCgCGCGgagccGCCGGCGGuCggCGGUCu -3' miRNA: 3'- uUUGGgGCGC-----CGGCCGCU-GuaGUCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 134210 | 0.67 | 0.675797 |
Target: 5'- gAAACCCCcugccGCcGCCGGCaagaGUCGGUCa -3' miRNA: 3'- -UUUGGGG-----CGcCGGCCGcug-UAGUCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 135244 | 0.76 | 0.239461 |
Target: 5'- gGAACCCCGCGGCuCGGUuGCGUUccgcgcuguuAGUCg -3' miRNA: 3'- -UUUGGGGCGCCG-GCCGcUGUAG----------UCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 135951 | 1.06 | 0.001832 |
Target: 5'- aAAACCCCGCGGCCGGCGACAUCAGUCu -3' miRNA: 3'- -UUUGGGGCGCCGGCCGCUGUAGUCAG- -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 136269 | 0.68 | 0.644876 |
Target: 5'- -cGCUgaCCGCGGCCGGCGuCAuguuccuguccccUCAGg- -3' miRNA: 3'- uuUGG--GGCGCCGGCCGCuGU-------------AGUCag -5' |
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9779 | 3' | -60 | NC_002577.1 | + | 136747 | 0.66 | 0.734488 |
Target: 5'- gGGGCCuuGUGcaGCUGGCGACAggcggaGGUCc -3' miRNA: 3'- -UUUGGggCGC--CGGCCGCUGUag----UCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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