miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9779 3' -60 NC_002577.1 + 135951 1.06 0.001832
Target:  5'- aAAACCCCGCGGCCGGCGACAUCAGUCu -3'
miRNA:   3'- -UUUGGGGCGCCGGCCGCUGUAGUCAG- -5'
9779 3' -60 NC_002577.1 + 161387 1.06 0.001832
Target:  5'- aAAACCCCGCGGCCGGCGACAUCAGUCu -3'
miRNA:   3'- -UUUGGGGCGCCGGCCGCUGUAGUCAG- -5'
9779 3' -60 NC_002577.1 + 78992 0.79 0.13968
Target:  5'- cGAACCCCGCGGCCGGUcuguuguucGCGUCAG-Ca -3'
miRNA:   3'- -UUUGGGGCGCCGGCCGc--------UGUAGUCaG- -5'
9779 3' -60 NC_002577.1 + 162084 0.76 0.239461
Target:  5'- gGAACCCCGCGGCuCGGUuGCGUUccgcgcuguuAGUCg -3'
miRNA:   3'- -UUUGGGGCGCCG-GCCGcUGUAG----------UCAG- -5'
9779 3' -60 NC_002577.1 + 135244 0.76 0.239461
Target:  5'- gGAACCCCGCGGCuCGGUuGCGUUccgcgcuguuAGUCg -3'
miRNA:   3'- -UUUGGGGCGCCG-GCCGcUGUAG----------UCAG- -5'
9779 3' -60 NC_002577.1 + 134071 0.74 0.30184
Target:  5'- -cGCCCgCGCGGCCGGCgGGCAU--GUCc -3'
miRNA:   3'- uuUGGG-GCGCCGGCCG-CUGUAguCAG- -5'
9779 3' -60 NC_002577.1 + 163257 0.74 0.301841
Target:  5'- -cGCCCgCGCGGCCGGCgGGCAU--GUCc -3'
miRNA:   3'- uuUGGG-GCGCCGGCCG-CUGUAguCAG- -5'
9779 3' -60 NC_002577.1 + 122839 0.73 0.352528
Target:  5'- cGACCCCGC-GUCGGCGACG-CGGcCg -3'
miRNA:   3'- uUUGGGGCGcCGGCCGCUGUaGUCaG- -5'
9779 3' -60 NC_002577.1 + 101742 0.73 0.352529
Target:  5'- ---aCCCGCGGCUaagggaGGUGAC-UCAGUCg -3'
miRNA:   3'- uuugGGGCGCCGG------CCGCUGuAGUCAG- -5'
9779 3' -60 NC_002577.1 + 10774 0.73 0.352529
Target:  5'- cGACCCCGC-GUCGGCGACG-CGGcCg -3'
miRNA:   3'- uUUGGGGCGcCGGCCGCUGUaGUCaG- -5'
9779 3' -60 NC_002577.1 + 138456 0.71 0.461572
Target:  5'- ----gCCGCGGCCGGCGGgcgcCAUCAccGUCc -3'
miRNA:   3'- uuuggGGCGCCGGCCGCU----GUAGU--CAG- -5'
9779 3' -60 NC_002577.1 + 137309 0.71 0.461572
Target:  5'- aAGACCCCGCucGGCCuuGGCGAUGcccUgGGUCg -3'
miRNA:   3'- -UUUGGGGCG--CCGG--CCGCUGU---AgUCAG- -5'
9779 3' -60 NC_002577.1 + 160029 0.71 0.461572
Target:  5'- aAGACCCCGCucGGCCuuGGCGAUGcccUgGGUCg -3'
miRNA:   3'- -UUUGGGGCG--CCGG--CCGCUGU---AgUCAG- -5'
9779 3' -60 NC_002577.1 + 158881 0.71 0.461572
Target:  5'- ----gCCGCGGCCGGCGGgcgcCAUCAccGUCc -3'
miRNA:   3'- uuuggGGCGCCGGCCGCU----GUAGU--CAG- -5'
9779 3' -60 NC_002577.1 + 38535 0.7 0.498561
Target:  5'- -cGCCCgGCgGGCCGGCGACGaaucuaUUAGa- -3'
miRNA:   3'- uuUGGGgCG-CCGGCCGCUGU------AGUCag -5'
9779 3' -60 NC_002577.1 + 6938 0.68 0.605869
Target:  5'- --uCCCCGUuuGGCCGGUGG-AUgAGUCg -3'
miRNA:   3'- uuuGGGGCG--CCGGCCGCUgUAgUCAG- -5'
9779 3' -60 NC_002577.1 + 126676 0.68 0.605869
Target:  5'- --uCCCCGUuuGGCCGGUGG-AUgAGUCg -3'
miRNA:   3'- uuuGGGGCG--CCGGCCGCUgUAgUCAG- -5'
9779 3' -60 NC_002577.1 + 159036 0.68 0.625863
Target:  5'- --cCUCCGCGGCCG-CGGCcgCGGcCu -3'
miRNA:   3'- uuuGGGGCGCCGGCcGCUGuaGUCaG- -5'
9779 3' -60 NC_002577.1 + 53618 0.68 0.625863
Target:  5'- aGAACUCUaGCGGCCGGCGu--UCGauGUCa -3'
miRNA:   3'- -UUUGGGG-CGCCGGCCGCuguAGU--CAG- -5'
9779 3' -60 NC_002577.1 + 138302 0.68 0.625863
Target:  5'- --cCUCCGCGGCCG-CGGCcgCGGcCu -3'
miRNA:   3'- uuuGGGGCGCCGGCcGCUGuaGUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.