miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9779 5' -49.3 NC_002577.1 + 55027 0.79 0.663319
Target:  5'- cGGGAGUGGCGUUCGGUACAuGGUacCGUa -3'
miRNA:   3'- -CCUUCGUUGCAGGCUAUGUuCCA--GCG- -5'
9779 5' -49.3 NC_002577.1 + 62710 0.73 0.92339
Target:  5'- cGGAGGUAGCGg-CGAUACAGugucuGUCGCc -3'
miRNA:   3'- -CCUUCGUUGCagGCUAUGUUc----CAGCG- -5'
9779 5' -49.3 NC_002577.1 + 62771 0.68 0.996166
Target:  5'- cGGAGCAugGUU--GUGacGGGUCGCa -3'
miRNA:   3'- cCUUCGUugCAGgcUAUguUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 73954 0.7 0.98277
Target:  5'- cGGGAGCAuccGCGUCgGAaggauGGGUCGa -3'
miRNA:   3'- -CCUUCGU---UGCAGgCUaugu-UCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 83483 0.67 0.997672
Target:  5'- cGGAGGa---GUCC-AUACAGGG-CGCc -3'
miRNA:   3'- -CCUUCguugCAGGcUAUGUUCCaGCG- -5'
9779 5' -49.3 NC_002577.1 + 90418 0.66 0.999393
Target:  5'- aGGAAGCuACuUuuGAUGCGuGGUUGa -3'
miRNA:   3'- -CCUUCGuUGcAggCUAUGUuCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 99140 0.68 0.993001
Target:  5'- gGGggGCuagAACGUcgaCCGAgGCG-GGUCGUu -3'
miRNA:   3'- -CCuuCG---UUGCA---GGCUaUGUuCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 100140 0.7 0.978403
Target:  5'- cGGAAGCGuCGUUugCGggAUAAGGUUGUc -3'
miRNA:   3'- -CCUUCGUuGCAG--GCuaUGUUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 101305 0.68 0.995514
Target:  5'- gGGuuGCGGCucgGUCCGAUGCGggcgaAGGcucCGCa -3'
miRNA:   3'- -CCuuCGUUG---CAGGCUAUGU-----UCCa--GCG- -5'
9779 5' -49.3 NC_002577.1 + 116934 0.74 0.904718
Target:  5'- gGGAAGCccgucuggguuggAGCGUCCGAUGUAGaGUCGUa -3'
miRNA:   3'- -CCUUCG-------------UUGCAGGCUAUGUUcCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 119877 0.66 0.998884
Target:  5'- cGGGuucCAACGUCCacgucccAUACAuAGGUUGCg -3'
miRNA:   3'- -CCUuc-GUUGCAGGc------UAUGU-UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 121944 0.76 0.803118
Target:  5'- gGGAGGCGcCGUCCGAgGCcgccggggagGAGGUUGUg -3'
miRNA:   3'- -CCUUCGUuGCAGGCUaUG----------UUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 122041 0.74 0.898848
Target:  5'- ---cGCGGCGUCCGAUcCGGGaUCGCu -3'
miRNA:   3'- ccuuCGUUGCAGGCUAuGUUCcAGCG- -5'
9779 5' -49.3 NC_002577.1 + 122561 0.69 0.989472
Target:  5'- gGGggGCGGCGUuucuagcccCCGGcGCG-GGcCGCg -3'
miRNA:   3'- -CCuuCGUUGCA---------GGCUaUGUuCCaGCG- -5'
9779 5' -49.3 NC_002577.1 + 122612 0.66 0.999205
Target:  5'- gGGAAGCGAucgcgcgcCGUcCCGAgaacgucgucUACGgcucgcguucgcggGGGUCGCc -3'
miRNA:   3'- -CCUUCGUU--------GCA-GGCU----------AUGU--------------UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 122954 0.69 0.992384
Target:  5'- uGggGCGuccucccucgACGUCCGAcgguuccggacgccGCgAGGGUCGCg -3'
miRNA:   3'- cCuuCGU----------UGCAGGCUa-------------UG-UUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 123038 0.72 0.948402
Target:  5'- -cGAGCGGCGUucggccgcgucgCCGAcGCGGGGUCGg -3'
miRNA:   3'- ccUUCGUUGCA------------GGCUaUGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 126543 0.67 0.997237
Target:  5'- aGGgcGCcgaGACGUCCGAUG--GGGUUccaGCu -3'
miRNA:   3'- -CCuuCG---UUGCAGGCUAUguUCCAG---CG- -5'
9779 5' -49.3 NC_002577.1 + 128154 0.76 0.838341
Target:  5'- gGGAGGUAgagGCGUCgGAUGCGGGG-CGa -3'
miRNA:   3'- -CCUUCGU---UGCAGgCUAUGUUCCaGCg -5'
9779 5' -49.3 NC_002577.1 + 131330 0.7 0.978403
Target:  5'- aGggGCAAgcUCaGGUGCAGGGUCGg -3'
miRNA:   3'- cCuuCGUUgcAGgCUAUGUUCCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.