miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9779 5' -49.3 NC_002577.1 + 2246 0.66 0.999393
Target:  5'- aGggGCAGgGUUagGGU-CAGGGUCGg -3'
miRNA:   3'- cCuuCGUUgCAGg-CUAuGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 2284 0.7 0.978403
Target:  5'- aGggGCAAgcUCaGGUGCAGGGUCGg -3'
miRNA:   3'- cCuuCGUUgcAGgCUAUGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 3612 0.66 0.999084
Target:  5'- cGGgcGCGaaGCGgCUGggAUcGGGUCGCg -3'
miRNA:   3'- -CCuuCGU--UGCaGGCuaUGuUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 5460 0.76 0.838341
Target:  5'- gGGAGGUAgagGCGUCgGAUGCGGGG-CGa -3'
miRNA:   3'- -CCUUCGU---UGCAGgCUAUGUUCCaGCg -5'
9779 5' -49.3 NC_002577.1 + 7070 0.67 0.997237
Target:  5'- aGGgcGCcgaGACGUCCGAUG--GGGUUccaGCu -3'
miRNA:   3'- -CCuuCG---UUGCAGGCUAUguUCCAG---CG- -5'
9779 5' -49.3 NC_002577.1 + 10576 0.72 0.948402
Target:  5'- -cGAGCGGCGUucggccgcgucgCCGAcGCGGGGUCGg -3'
miRNA:   3'- ccUUCGUUGCA------------GGCUaUGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 10660 0.69 0.992384
Target:  5'- uGggGCGuccucccucgACGUCCGAcgguuccggacgccGCgAGGGUCGCg -3'
miRNA:   3'- cCuuCGU----------UGCAGGCUa-------------UG-UUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 11002 0.66 0.999205
Target:  5'- gGGAAGCGAucgcgcgcCGUcCCGAgaacgucgucUACGgcucgcguucgcggGGGUCGCc -3'
miRNA:   3'- -CCUUCGUU--------GCA-GGCU----------AUGU--------------UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 11052 0.69 0.989472
Target:  5'- gGGggGCGGCGUuucuagcccCCGGcGCG-GGcCGCg -3'
miRNA:   3'- -CCuuCGUUGCA---------GGCUaUGUuCCaGCG- -5'
9779 5' -49.3 NC_002577.1 + 11573 0.74 0.898848
Target:  5'- ---cGCGGCGUCCGAUcCGGGaUCGCu -3'
miRNA:   3'- ccuuCGUUGCAGGCUAuGUUCcAGCG- -5'
9779 5' -49.3 NC_002577.1 + 11669 0.76 0.803118
Target:  5'- gGGAGGCGcCGUCCGAgGCcgccggggagGAGGUUGUg -3'
miRNA:   3'- -CCUUCGUuGCAGGCUaUG----------UUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 13942 0.66 0.998648
Target:  5'- aGGGAGUAuuCGcaugcauguuUCCGAaccgucuuccGCAGGGUCGCc -3'
miRNA:   3'- -CCUUCGUu-GC----------AGGCUa---------UGUUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 19071 0.67 0.997237
Target:  5'- aGGAcuGCAGuCGcCCGGgaaACGGGGUCGa -3'
miRNA:   3'- -CCUu-CGUU-GCaGGCUa--UGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 20737 0.69 0.988028
Target:  5'- -cGAGCcuauuaGACGUaaGAUACAuccccAGGUCGCg -3'
miRNA:   3'- ccUUCG------UUGCAggCUAUGU-----UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 23362 0.7 0.98277
Target:  5'- aGAAGCgAGCGcUCU-AUGCAGGcGUCGCg -3'
miRNA:   3'- cCUUCG-UUGC-AGGcUAUGUUC-CAGCG- -5'
9779 5' -49.3 NC_002577.1 + 30565 0.67 0.997672
Target:  5'- -uGAGCAAUG-CCGGgcuguCGGGGuUCGCa -3'
miRNA:   3'- ccUUCGUUGCaGGCUau---GUUCC-AGCG- -5'
9779 5' -49.3 NC_002577.1 + 37604 0.67 0.997672
Target:  5'- aGGuucuauGGCGACGUCCGGaagaccgaUACA-GGUCc- -3'
miRNA:   3'- -CCu-----UCGUUGCAGGCU--------AUGUuCCAGcg -5'
9779 5' -49.3 NC_002577.1 + 44363 0.67 0.997237
Target:  5'- gGGAGGCuccuCGUCgGGUugGAuGUCGg -3'
miRNA:   3'- -CCUUCGuu--GCAGgCUAugUUcCAGCg -5'
9779 5' -49.3 NC_002577.1 + 46949 0.67 0.997672
Target:  5'- cGGAGGaCAGCGgcaUCCGGc-CAuGGUCGUc -3'
miRNA:   3'- -CCUUC-GUUGC---AGGCUauGUuCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 46982 0.68 0.99394
Target:  5'- -cGGGCcGCGUCCGAUGUAAGGacuaaUUGCc -3'
miRNA:   3'- ccUUCGuUGCAGGCUAUGUUCC-----AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.