miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9779 5' -49.3 NC_002577.1 + 161421 1.17 0.005447
Target:  5'- cGGAAGCAACGUCCGAUACAAGGUCGCg -3'
miRNA:   3'- -CCUUCGUUGCAGGCUAUGUUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 10660 0.69 0.992384
Target:  5'- uGggGCGuccucccucgACGUCCGAcgguuccggacgccGCgAGGGUCGCg -3'
miRNA:   3'- cCuuCGU----------UGCAGGCUa-------------UG-UUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 141205 0.68 0.994775
Target:  5'- -cAAGCAcACGUCCuGGUACGgaucucccgGGGUgGCg -3'
miRNA:   3'- ccUUCGU-UGCAGG-CUAUGU---------UCCAgCG- -5'
9779 5' -49.3 NC_002577.1 + 131368 0.66 0.999393
Target:  5'- aGggGCAGgGUUagGGU-CAGGGUCGg -3'
miRNA:   3'- cCuuCGUUgCAGg-CUAuGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 122041 0.74 0.898848
Target:  5'- ---cGCGGCGUCCGAUcCGGGaUCGCu -3'
miRNA:   3'- ccuuCGUUGCAGGCUAuGUUCcAGCG- -5'
9779 5' -49.3 NC_002577.1 + 116934 0.74 0.904718
Target:  5'- gGGAAGCccgucuggguuggAGCGUCCGAUGUAGaGUCGUa -3'
miRNA:   3'- -CCUUCG-------------UUGCAGGCUAUGUUcCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 136984 0.72 0.95667
Target:  5'- cGGAAGaggccgcguCGGCGUCCGcgAgAAGG-CGCg -3'
miRNA:   3'- -CCUUC---------GUUGCAGGCuaUgUUCCaGCG- -5'
9779 5' -49.3 NC_002577.1 + 137095 0.72 0.960444
Target:  5'- cGGAAGUAAUGUCCcucGAccCAGGGcaUCGCc -3'
miRNA:   3'- -CCUUCGUUGCAGG---CUauGUUCC--AGCG- -5'
9779 5' -49.3 NC_002577.1 + 23362 0.7 0.98277
Target:  5'- aGAAGCgAGCGcUCU-AUGCAGGcGUCGCg -3'
miRNA:   3'- cCUUCG-UUGC-AGGcUAUGUUC-CAGCG- -5'
9779 5' -49.3 NC_002577.1 + 140775 0.69 0.991837
Target:  5'- cGGcGAGCGGCGUgcaggcgCCGGUgggcuuACAGGG-CGCg -3'
miRNA:   3'- -CC-UUCGUUGCA-------GGCUA------UGUUCCaGCG- -5'
9779 5' -49.3 NC_002577.1 + 159772 0.69 0.988028
Target:  5'- cGGAccCGACgGUCCGG-GCGcGGUCGCg -3'
miRNA:   3'- -CCUucGUUG-CAGGCUaUGUuCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 100140 0.7 0.978403
Target:  5'- cGGAAGCGuCGUUugCGggAUAAGGUUGUc -3'
miRNA:   3'- -CCUUCGUuGCAG--GCuaUGUUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 55027 0.79 0.663319
Target:  5'- cGGGAGUGGCGUUCGGUACAuGGUacCGUa -3'
miRNA:   3'- -CCUUCGUUGCAGGCUAUGUuCCA--GCG- -5'
9779 5' -49.3 NC_002577.1 + 11052 0.69 0.989472
Target:  5'- gGGggGCGGCGUuucuagcccCCGGcGCG-GGcCGCg -3'
miRNA:   3'- -CCuuCGUUGCA---------GGCUaUGUuCCaGCG- -5'
9779 5' -49.3 NC_002577.1 + 121944 0.76 0.803118
Target:  5'- gGGAGGCGcCGUCCGAgGCcgccggggagGAGGUUGUg -3'
miRNA:   3'- -CCUUCGUuGCAGGCUaUG----------UUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 131330 0.7 0.978403
Target:  5'- aGggGCAAgcUCaGGUGCAGGGUCGg -3'
miRNA:   3'- cCuuCGUUgcAGgCUAUGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 162073 0.69 0.990776
Target:  5'- aGGggGcCGGCGgaaccCCGcgGCucGGUUGCg -3'
miRNA:   3'- -CCuuC-GUUGCa----GGCuaUGuuCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 46982 0.68 0.99394
Target:  5'- -cGGGCcGCGUCCGAUGUAAGGacuaaUUGCc -3'
miRNA:   3'- ccUUCGuUGCAGGCUAUGUUCC-----AGCG- -5'
9779 5' -49.3 NC_002577.1 + 128154 0.76 0.838341
Target:  5'- gGGAGGUAgagGCGUCgGAUGCGGGG-CGa -3'
miRNA:   3'- -CCUUCGU---UGCAGgCUAUGUUCCaGCg -5'
9779 5' -49.3 NC_002577.1 + 10576 0.72 0.948402
Target:  5'- -cGAGCGGCGUucggccgcgucgCCGAcGCGGGGUCGg -3'
miRNA:   3'- ccUUCGUUGCA------------GGCUaUGUUCCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.