Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9779 | 5' | -49.3 | NC_002577.1 | + | 161421 | 1.17 | 0.005447 |
Target: 5'- cGGAAGCAACGUCCGAUACAAGGUCGCg -3' miRNA: 3'- -CCUUCGUUGCAGGCUAUGUUCCAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 135917 | 1.17 | 0.005447 |
Target: 5'- cGGAAGCAACGUCCGAUACAAGGUCGCg -3' miRNA: 3'- -CCUUCGUUGCAGGCUAUGUUCCAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 55027 | 0.79 | 0.663319 |
Target: 5'- cGGGAGUGGCGUUCGGUACAuGGUacCGUa -3' miRNA: 3'- -CCUUCGUUGCAGGCUAUGUuCCA--GCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 11669 | 0.76 | 0.803118 |
Target: 5'- gGGAGGCGcCGUCCGAgGCcgccggggagGAGGUUGUg -3' miRNA: 3'- -CCUUCGUuGCAGGCUaUG----------UUCCAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 121944 | 0.76 | 0.803118 |
Target: 5'- gGGAGGCGcCGUCCGAgGCcgccggggagGAGGUUGUg -3' miRNA: 3'- -CCUUCGUuGCAGGCUaUG----------UUCCAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 128154 | 0.76 | 0.838341 |
Target: 5'- gGGAGGUAgagGCGUCgGAUGCGGGG-CGa -3' miRNA: 3'- -CCUUCGU---UGCAGgCUAUGUUCCaGCg -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 5460 | 0.76 | 0.838341 |
Target: 5'- gGGAGGUAgagGCGUCgGAUGCGGGG-CGa -3' miRNA: 3'- -CCUUCGU---UGCAGgCUAUGUUCCaGCg -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 122041 | 0.74 | 0.898848 |
Target: 5'- ---cGCGGCGUCCGAUcCGGGaUCGCu -3' miRNA: 3'- ccuuCGUUGCAGGCUAuGUUCcAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 11573 | 0.74 | 0.898848 |
Target: 5'- ---cGCGGCGUCCGAUcCGGGaUCGCu -3' miRNA: 3'- ccuuCGUUGCAGGCUAuGUUCcAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 116934 | 0.74 | 0.904718 |
Target: 5'- gGGAAGCccgucuggguuggAGCGUCCGAUGUAGaGUCGUa -3' miRNA: 3'- -CCUUCG-------------UUGCAGGCUAUGUUcCAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 62710 | 0.73 | 0.92339 |
Target: 5'- cGGAGGUAGCGg-CGAUACAGugucuGUCGCc -3' miRNA: 3'- -CCUUCGUUGCagGCUAUGUUc----CAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 10576 | 0.72 | 0.948402 |
Target: 5'- -cGAGCGGCGUucggccgcgucgCCGAcGCGGGGUCGg -3' miRNA: 3'- ccUUCGUUGCA------------GGCUaUGUUCCAGCg -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 123038 | 0.72 | 0.948402 |
Target: 5'- -cGAGCGGCGUucggccgcgucgCCGAcGCGGGGUCGg -3' miRNA: 3'- ccUUCGUUGCA------------GGCUaUGUUCCAGCg -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 136984 | 0.72 | 0.95667 |
Target: 5'- cGGAAGaggccgcguCGGCGUCCGcgAgAAGG-CGCg -3' miRNA: 3'- -CCUUC---------GUUGCAGGCuaUgUUCCaGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 160353 | 0.72 | 0.95667 |
Target: 5'- cGGAAGaggccgcguCGGCGUCCGcgAgAAGG-CGCg -3' miRNA: 3'- -CCUUC---------GUUGCAGGCuaUgUUCCaGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 137095 | 0.72 | 0.960444 |
Target: 5'- cGGAAGUAAUGUCCcucGAccCAGGGcaUCGCc -3' miRNA: 3'- -CCUUCGUUGCAGG---CUauGUUCC--AGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 160243 | 0.72 | 0.960444 |
Target: 5'- cGGAAGUAAUGUCCcucGAccCAGGGcaUCGCc -3' miRNA: 3'- -CCUUCGUUGCAGG---CUauGUUCC--AGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 135255 | 0.7 | 0.975935 |
Target: 5'- aGGggGcCAGCGgaaccCCGcgGCucGGUUGCg -3' miRNA: 3'- -CCuuC-GUUGCa----GGCuaUGuuCCAGCG- -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 131330 | 0.7 | 0.978403 |
Target: 5'- aGggGCAAgcUCaGGUGCAGGGUCGg -3' miRNA: 3'- cCuuCGUUgcAGgCUAUGUUCCAGCg -5' |
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9779 | 5' | -49.3 | NC_002577.1 | + | 2284 | 0.7 | 0.978403 |
Target: 5'- aGggGCAAgcUCaGGUGCAGGGUCGg -3' miRNA: 3'- cCuuCGUUgcAGgCUAUGUUCCAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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