miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9812 3' -52.7 NC_002593.1 + 70180 1.09 0.004134
Target:  5'- cUGUACGCCAAAACGGCCGACGUCACUa -3'
miRNA:   3'- -ACAUGCGGUUUUGCCGGCUGCAGUGA- -5'
9812 3' -52.7 NC_002593.1 + 29435 0.66 0.946394
Target:  5'- cGUGCGCCAcGACGcgacccucGCCGucgaacggguaaGCGUCAa- -3'
miRNA:   3'- aCAUGCGGUuUUGC--------CGGC------------UGCAGUga -5'
9812 3' -52.7 NC_002593.1 + 29904 0.66 0.93673
Target:  5'- cGUccACGCCAAggugugcaugguGACGGCaGACGUCc-- -3'
miRNA:   3'- aCA--UGCGGUU------------UUGCCGgCUGCAGuga -5'
9812 3' -52.7 NC_002593.1 + 37817 0.67 0.926022
Target:  5'- cGUugGCCGccAGGCGGCgcCGACcagcUCGCUu -3'
miRNA:   3'- aCAugCGGU--UUUGCCG--GCUGc---AGUGA- -5'
9812 3' -52.7 NC_002593.1 + 36284 0.67 0.926022
Target:  5'- cGU-CGUCuucGGGCGGCggCGGCGUCACc -3'
miRNA:   3'- aCAuGCGGu--UUUGCCG--GCUGCAGUGa -5'
9812 3' -52.7 NC_002593.1 + 30459 0.67 0.920274
Target:  5'- cUGUACuGCUGGAAC-GCCGGCGaUUACg -3'
miRNA:   3'- -ACAUG-CGGUUUUGcCGGCUGC-AGUGa -5'
9812 3' -52.7 NC_002593.1 + 50835 0.69 0.840423
Target:  5'- cGUAUGCgGAaaaaaugauGACGuacuuugucagcGCCGGCGUCACUu -3'
miRNA:   3'- aCAUGCGgUU---------UUGC------------CGGCUGCAGUGA- -5'
9812 3' -52.7 NC_002593.1 + 69261 0.7 0.81391
Target:  5'- cGUACGCCGAcagauuuuACGGaaGACGUCugaGCg -3'
miRNA:   3'- aCAUGCGGUUu-------UGCCggCUGCAG---UGa -5'
9812 3' -52.7 NC_002593.1 + 79719 0.72 0.683693
Target:  5'- uUGUACGCCcugcGAACcacGCCGACGUC-CUu -3'
miRNA:   3'- -ACAUGCGGu---UUUGc--CGGCUGCAGuGA- -5'
9812 3' -52.7 NC_002593.1 + 31491 0.72 0.673056
Target:  5'- --gACGCCAAcACGGCCGAUuUCAg- -3'
miRNA:   3'- acaUGCGGUUuUGCCGGCUGcAGUga -5'
9812 3' -52.7 NC_002593.1 + 67726 0.69 0.822941
Target:  5'- --cACGCCGAcGACGGC-GACGUCGu- -3'
miRNA:   3'- acaUGCGGUU-UUGCCGgCUGCAGUga -5'
9812 3' -52.7 NC_002593.1 + 70037 0.69 0.831782
Target:  5'- uUGUACGCCAAcuugagugguAugGGCCugaccGCGUCGg- -3'
miRNA:   3'- -ACAUGCGGUU----------UugCCGGc----UGCAGUga -5'
9812 3' -52.7 NC_002593.1 + 99541 0.69 0.839568
Target:  5'- aGUACGUUgccacccugagcgAAAGCGGCCacaACGUCACc -3'
miRNA:   3'- aCAUGCGG-------------UUUUGCCGGc--UGCAGUGa -5'
9812 3' -52.7 NC_002593.1 + 37687 0.66 0.931508
Target:  5'- gUGUGCGUgauGAGCGGCgGuaaaggcguCGUCACUu -3'
miRNA:   3'- -ACAUGCGgu-UUUGCCGgCu--------GCAGUGA- -5'
9812 3' -52.7 NC_002593.1 + 37941 0.66 0.95084
Target:  5'- gGUcgGCGCCGccuGGCGGCCaACGaCACc -3'
miRNA:   3'- aCA--UGCGGUu--UUGCCGGcUGCaGUGa -5'
9812 3' -52.7 NC_002593.1 + 67312 0.69 0.822941
Target:  5'- aUGUGCGUaga---GGCgGGCGUCACg -3'
miRNA:   3'- -ACAUGCGguuuugCCGgCUGCAGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.