miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9876 3' -55.2 NC_002641.1 + 5691 0.66 0.945497
Target:  5'- cGCGCAgggAUGUCGggcGCGCCGggaugagCGgCCGa -3'
miRNA:   3'- aUGCGU---UAUAGC---UGCGGCa------GCgGGCg -5'
9876 3' -55.2 NC_002641.1 + 118031 0.66 0.945497
Target:  5'- cGCGCAgggAUGUCGggcGCGCCGggaugagCGgCCGa -3'
miRNA:   3'- aUGCGU---UAUAGC---UGCGGCa------GCgGGCg -5'
9876 3' -55.2 NC_002641.1 + 130101 0.66 0.945497
Target:  5'- gUACGCGGUGgacguguaCGACGCaCGggaCGaCCGCg -3'
miRNA:   3'- -AUGCGUUAUa-------GCUGCG-GCa--GCgGGCG- -5'
9876 3' -55.2 NC_002641.1 + 62086 0.66 0.945497
Target:  5'- gACGCugcAUGUgGAUGCaaauGUC-CCCGCg -3'
miRNA:   3'- aUGCGu--UAUAgCUGCGg---CAGcGGGCG- -5'
9876 3' -55.2 NC_002641.1 + 152371 0.66 0.945497
Target:  5'- gUACGCGGUGgacguguaCGACGCaCGggaCGaCCGCg -3'
miRNA:   3'- -AUGCGUUAUa-------GCUGCG-GCa--GCgGGCG- -5'
9876 3' -55.2 NC_002641.1 + 68367 0.66 0.944165
Target:  5'- -cUGCAuuguuugaccaaaaGUAUUuuuGCGCCGUCGuCCCGUa -3'
miRNA:   3'- auGCGU--------------UAUAGc--UGCGGCAGC-GGGCG- -5'
9876 3' -55.2 NC_002641.1 + 56049 0.66 0.940974
Target:  5'- cGCGCGGcAUCa--GCCGaCGCCgCGCg -3'
miRNA:   3'- aUGCGUUaUAGcugCGGCaGCGG-GCG- -5'
9876 3' -55.2 NC_002641.1 + 153564 0.66 0.939099
Target:  5'- cGCGCGGUGUCGcuaguagcggaaGCgGUCGgaCCGCu -3'
miRNA:   3'- aUGCGUUAUAGCug----------CGgCAGCg-GGCG- -5'
9876 3' -55.2 NC_002641.1 + 128909 0.66 0.939099
Target:  5'- cGCGCGGUGUCGcuaguagcggaaGCgGUCGgaCCGCu -3'
miRNA:   3'- aUGCGUUAUAGCug----------CGgCAGCg-GGCG- -5'
9876 3' -55.2 NC_002641.1 + 118263 0.66 0.931218
Target:  5'- -cCGUuauccUCGA-GCCgGUCGCCCGCc -3'
miRNA:   3'- auGCGuuau-AGCUgCGG-CAGCGGGCG- -5'
9876 3' -55.2 NC_002641.1 + 43551 0.66 0.925984
Target:  5'- aAUGCAAUcccCGAgCGCgGUCGCCUucgGCg -3'
miRNA:   3'- aUGCGUUAua-GCU-GCGgCAGCGGG---CG- -5'
9876 3' -55.2 NC_002641.1 + 82527 0.67 0.908851
Target:  5'- aUGCGCAGaaaauuccccUA-CGGaGCCGUgGCCCGUu -3'
miRNA:   3'- -AUGCGUU----------AUaGCUgCGGCAgCGGGCG- -5'
9876 3' -55.2 NC_002641.1 + 141184 0.67 0.896253
Target:  5'- --gGCGAcAUCGACGguucugcaaCCGUCGUaCCGCu -3'
miRNA:   3'- augCGUUaUAGCUGC---------GGCAGCG-GGCG- -5'
9876 3' -55.2 NC_002641.1 + 145077 0.68 0.882736
Target:  5'- cGCGCGcAUAUCGAaacaGCagGUCGCCUuaaaGCa -3'
miRNA:   3'- aUGCGU-UAUAGCUg---CGg-CAGCGGG----CG- -5'
9876 3' -55.2 NC_002641.1 + 56233 0.68 0.868332
Target:  5'- cGCGCGGcGUCGGCugauGCCGcgCGCagaCGCa -3'
miRNA:   3'- aUGCGUUaUAGCUG----CGGCa-GCGg--GCG- -5'
9876 3' -55.2 NC_002641.1 + 102067 0.68 0.860811
Target:  5'- gGCGCAAauacgaaCGGCGCCGUCcaUCCGUg -3'
miRNA:   3'- aUGCGUUaua----GCUGCGGCAGc-GGGCG- -5'
9876 3' -55.2 NC_002641.1 + 1257 0.68 0.853083
Target:  5'- cGgGCAA---CGugGCUGUUGCCCGa -3'
miRNA:   3'- aUgCGUUauaGCugCGGCAGCGGGCg -5'
9876 3' -55.2 NC_002641.1 + 122465 0.68 0.853083
Target:  5'- cGgGCAA---CGugGCUGUUGCCCGa -3'
miRNA:   3'- aUgCGUUauaGCugCGGCAGCGGGCg -5'
9876 3' -55.2 NC_002641.1 + 73751 0.69 0.837035
Target:  5'- --gGCAuuUGUCGACGCUuuaGCCCGUg -3'
miRNA:   3'- augCGUu-AUAGCUGCGGcagCGGGCG- -5'
9876 3' -55.2 NC_002641.1 + 107645 0.69 0.836213
Target:  5'- gUAUGCuuAUAUCGcAUGCaCGUaaacccgCGCCCGCg -3'
miRNA:   3'- -AUGCGu-UAUAGC-UGCG-GCA-------GCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.