miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9876 3' -55.2 NC_002641.1 + 118263 0.66 0.931218
Target:  5'- -cCGUuauccUCGA-GCCgGUCGCCCGCc -3'
miRNA:   3'- auGCGuuau-AGCUgCGG-CAGCGGGCG- -5'
9876 3' -55.2 NC_002641.1 + 128909 0.66 0.939099
Target:  5'- cGCGCGGUGUCGcuaguagcggaaGCgGUCGgaCCGCu -3'
miRNA:   3'- aUGCGUUAUAGCug----------CGgCAGCg-GGCG- -5'
9876 3' -55.2 NC_002641.1 + 153564 0.66 0.939099
Target:  5'- cGCGCGGUGUCGcuaguagcggaaGCgGUCGgaCCGCu -3'
miRNA:   3'- aUGCGUUAUAGCug----------CGgCAGCg-GGCG- -5'
9876 3' -55.2 NC_002641.1 + 56049 0.66 0.940974
Target:  5'- cGCGCGGcAUCa--GCCGaCGCCgCGCg -3'
miRNA:   3'- aUGCGUUaUAGcugCGGCaGCGG-GCG- -5'
9876 3' -55.2 NC_002641.1 + 68367 0.66 0.944165
Target:  5'- -cUGCAuuguuugaccaaaaGUAUUuuuGCGCCGUCGuCCCGUa -3'
miRNA:   3'- auGCGU--------------UAUAGc--UGCGGCAGC-GGGCG- -5'
9876 3' -55.2 NC_002641.1 + 118031 0.66 0.945497
Target:  5'- cGCGCAgggAUGUCGggcGCGCCGggaugagCGgCCGa -3'
miRNA:   3'- aUGCGU---UAUAGC---UGCGGCa------GCgGGCg -5'
9876 3' -55.2 NC_002641.1 + 62086 0.66 0.945497
Target:  5'- gACGCugcAUGUgGAUGCaaauGUC-CCCGCg -3'
miRNA:   3'- aUGCGu--UAUAgCUGCGg---CAGcGGGCG- -5'
9876 3' -55.2 NC_002641.1 + 5691 0.66 0.945497
Target:  5'- cGCGCAgggAUGUCGggcGCGCCGggaugagCGgCCGa -3'
miRNA:   3'- aUGCGU---UAUAGC---UGCGGCa------GCgGGCg -5'
9876 3' -55.2 NC_002641.1 + 152371 0.66 0.945497
Target:  5'- gUACGCGGUGgacguguaCGACGCaCGggaCGaCCGCg -3'
miRNA:   3'- -AUGCGUUAUa-------GCUGCG-GCa--GCgGGCG- -5'
9876 3' -55.2 NC_002641.1 + 130101 0.66 0.945497
Target:  5'- gUACGCGGUGgacguguaCGACGCaCGggaCGaCCGCg -3'
miRNA:   3'- -AUGCGUUAUa-------GCUGCG-GCa--GCgGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.