miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9879 3' -47.8 NC_002641.1 + 12742 0.66 0.999702
Target:  5'- aGUGCCGGAc-AUGAguUGCCCgCUAc -3'
miRNA:   3'- cUAUGGCCUuuUAUUguAUGGGgGGU- -5'
9879 3' -47.8 NC_002641.1 + 146391 0.66 0.999755
Target:  5'- --cGCCGGGAAGUGuaaauugucgacGCAaacggaaauccCCCCCCAc -3'
miRNA:   3'- cuaUGGCCUUUUAU------------UGUau---------GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 131072 0.67 0.999093
Target:  5'- cAUGCCGGGAAGcAGgGUAUgUCCCGu -3'
miRNA:   3'- cUAUGGCCUUUUaUUgUAUGgGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 93165 0.67 0.999093
Target:  5'- aGUACCGGGgucGGAUuauGCAUACCCUa-- -3'
miRNA:   3'- cUAUGGCCU---UUUAu--UGUAUGGGGggu -5'
9879 3' -47.8 NC_002641.1 + 130906 0.66 0.999623
Target:  5'- uGUACCaGAGGA-GACAaucCCCCCCGu -3'
miRNA:   3'- cUAUGGcCUUUUaUUGUau-GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 104000 1.09 0.017922
Target:  5'- uGAUACCGGAAAAUAACAUACCCCCCAc -3'
miRNA:   3'- -CUAUGGCCUUUUAUUGUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 114943 0.81 0.599449
Target:  5'- cGGUGCa-GAAGAUAACAaGCCCCCCAg -3'
miRNA:   3'- -CUAUGgcCUUUUAUUGUaUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 120021 0.66 0.999623
Target:  5'- uGGUuuCCGGuAAAUAuaaaggaGUACCCCCCc -3'
miRNA:   3'- -CUAu-GGCCuUUUAUug-----UAUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 156201 0.66 0.999623
Target:  5'- ----aCGGAcuGUcacGACAUGCCCCCa- -3'
miRNA:   3'- cuaugGCCUuuUA---UUGUAUGGGGGgu -5'
9879 3' -47.8 NC_002641.1 + 41242 0.66 0.999526
Target:  5'- aGUAUCGGcGAuuAUGGCAUGCcaauuuCCCCCGg -3'
miRNA:   3'- cUAUGGCCuUU--UAUUGUAUG------GGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 158706 0.66 0.999515
Target:  5'- --aGCCGGcauggagAAAGUGAauauCCCCCCAc -3'
miRNA:   3'- cuaUGGCC-------UUUUAUUguauGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 101028 0.67 0.999265
Target:  5'- aGUACCGaGAAcuuUAACGaugcaaUACCCCCUg -3'
miRNA:   3'- cUAUGGC-CUUuu-AUUGU------AUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 152799 0.67 0.999265
Target:  5'- --gGCCGGGucGGUGACcgccgACCCCaCCGa -3'
miRNA:   3'- cuaUGGCCUu-UUAUUGua---UGGGG-GGU- -5'
9879 3' -47.8 NC_002641.1 + 151400 0.67 0.999093
Target:  5'- cAUGCCGGGAAGcAGgGUAUgUCCCGu -3'
miRNA:   3'- cUAUGGCCUUUUaUUgUAUGgGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 48876 0.67 0.999035
Target:  5'- --gGCCGGGugugauuccAAGUGGuCAUuucccauaauccugGCCCCCCAa -3'
miRNA:   3'- cuaUGGCCU---------UUUAUU-GUA--------------UGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 103354 0.69 0.992679
Target:  5'- gGGUGCCGGGAuau--CAUAUCCCgCGu -3'
miRNA:   3'- -CUAUGGCCUUuuauuGUAUGGGGgGU- -5'
9879 3' -47.8 NC_002641.1 + 127156 0.7 0.991553
Target:  5'- --cACCuGGggGAUGAUAUGCCCgugCCUAc -3'
miRNA:   3'- cuaUGG-CCuuUUAUUGUAUGGG---GGGU- -5'
9879 3' -47.8 NC_002641.1 + 13603 0.7 0.990296
Target:  5'- --cACgGGcgGGUAACAUAUCCCUCGu -3'
miRNA:   3'- cuaUGgCCuuUUAUUGUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 151286 0.71 0.981675
Target:  5'- cGGUACgagaggCGGggGAUGGCAgacACCaCCCCGg -3'
miRNA:   3'- -CUAUG------GCCuuUUAUUGUa--UGG-GGGGU- -5'
9879 3' -47.8 NC_002641.1 + 153947 0.72 0.964939
Target:  5'- --cACCGGggGGUAguuuccgcgcGCccGCCCCCCu -3'
miRNA:   3'- cuaUGGCCuuUUAU----------UGuaUGGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.