miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9879 3' -47.8 NC_002641.1 + 128526 0.72 0.964939
Target:  5'- --cACCGGggGGUAguuuccgcgcGCccGCCCCCCu -3'
miRNA:   3'- cuaUGGCCuuUUAU----------UGuaUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 3702 0.66 0.999623
Target:  5'- uGGUuuCCGGuAAAUAuaaaggaGUACCCCCCc -3'
miRNA:   3'- -CUAu-GGCCuUUUAUug-----UAUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 156059 0.66 0.999702
Target:  5'- --cGCCcGAAAAggAGgAUAUCCCCCAu -3'
miRNA:   3'- cuaUGGcCUUUUa-UUgUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 127420 0.66 0.999789
Target:  5'- --cACUGGAAGGUaaacacaaacgauuuGACAUugCCgCCAa -3'
miRNA:   3'- cuaUGGCCUUUUA---------------UUGUAugGGgGGU- -5'
9879 3' -47.8 NC_002641.1 + 54651 0.69 0.996045
Target:  5'- aGAUACCGGGcuuuGGAUGaACAUuUCCCCUu -3'
miRNA:   3'- -CUAUGGCCU----UUUAU-UGUAuGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 57545 0.68 0.997175
Target:  5'- -cUACCaaGAAAUGACAaACCUCCCAc -3'
miRNA:   3'- cuAUGGccUUUUAUUGUaUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 149562 0.67 0.998327
Target:  5'- uGAUGCgGGAGAGgauGCGUguucgagauucgaACCCCCgGa -3'
miRNA:   3'- -CUAUGgCCUUUUau-UGUA-------------UGGGGGgU- -5'
9879 3' -47.8 NC_002641.1 + 143536 0.67 0.998359
Target:  5'- --cACUGGAgcgcgGAGUGGgGgaacGCCCCCCAg -3'
miRNA:   3'- cuaUGGCCU-----UUUAUUgUa---UGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 131072 0.67 0.999093
Target:  5'- cAUGCCGGGAAGcAGgGUAUgUCCCGu -3'
miRNA:   3'- cUAUGGCCUUUUaUUgUAUGgGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 151567 0.66 0.999623
Target:  5'- uGUACCaGAGGA-GACAaucCCCCCCGu -3'
miRNA:   3'- cUAUGGcCUUUUaUUGUau-GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 123766 0.66 0.999515
Target:  5'- --aGCCGGcauggagAAAGUGAauauCCCCCCAc -3'
miRNA:   3'- cuaUGGCC-------UUUUAUUguauGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 93165 0.67 0.999093
Target:  5'- aGUACCGGGgucGGAUuauGCAUACCCUa-- -3'
miRNA:   3'- cUAUGGCCU---UUUAu--UGUAUGGGGggu -5'
9879 3' -47.8 NC_002641.1 + 131186 0.71 0.981675
Target:  5'- cGGUACgagaggCGGggGAUGGCAgacACCaCCCCGg -3'
miRNA:   3'- -CUAUG------GCCuuUUAUUGUa--UGG-GGGGU- -5'
9879 3' -47.8 NC_002641.1 + 127639 0.66 0.999526
Target:  5'- --aGCUGGGuucu-GCGUugCCCCCc -3'
miRNA:   3'- cuaUGGCCUuuuauUGUAugGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 155317 0.7 0.991553
Target:  5'- --cACCuGGggGAUGAUAUGCCCgugCCUAc -3'
miRNA:   3'- cuaUGG-CCuuUUAUUGUAUGGG---GGGU- -5'
9879 3' -47.8 NC_002641.1 + 95472 0.67 0.998747
Target:  5'- --aACUGGAGGGU--CAUugcucgccaaagaagGCCCCCCAg -3'
miRNA:   3'- cuaUGGCCUUUUAuuGUA---------------UGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 126271 0.66 0.999623
Target:  5'- ----aCGGAcuGUcacGACAUGCCCCCa- -3'
miRNA:   3'- cuaugGCCUuuUA---UUGUAUGGGGGgu -5'
9879 3' -47.8 NC_002641.1 + 12742 0.66 0.999702
Target:  5'- aGUGCCGGAc-AUGAguUGCCCgCUAc -3'
miRNA:   3'- cUAUGGCCUuuUAUUguAUGGGgGGU- -5'
9879 3' -47.8 NC_002641.1 + 134195 0.69 0.995355
Target:  5'- ----aCGGccauAGGUAACGcGCCCCCCAu -3'
miRNA:   3'- cuaugGCCu---UUUAUUGUaUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 48082 0.68 0.997794
Target:  5'- -uUGCUGGAGucuaaaacguugaucGAgcGCAUGgCCCCCAg -3'
miRNA:   3'- cuAUGGCCUU---------------UUauUGUAUgGGGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.