Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9879 | 3' | -47.8 | NC_002641.1 | + | 128526 | 0.72 | 0.964939 |
Target: 5'- --cACCGGggGGUAguuuccgcgcGCccGCCCCCCu -3' miRNA: 3'- cuaUGGCCuuUUAU----------UGuaUGGGGGGu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 3702 | 0.66 | 0.999623 |
Target: 5'- uGGUuuCCGGuAAAUAuaaaggaGUACCCCCCc -3' miRNA: 3'- -CUAu-GGCCuUUUAUug-----UAUGGGGGGu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 156059 | 0.66 | 0.999702 |
Target: 5'- --cGCCcGAAAAggAGgAUAUCCCCCAu -3' miRNA: 3'- cuaUGGcCUUUUa-UUgUAUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 127420 | 0.66 | 0.999789 |
Target: 5'- --cACUGGAAGGUaaacacaaacgauuuGACAUugCCgCCAa -3' miRNA: 3'- cuaUGGCCUUUUA---------------UUGUAugGGgGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 54651 | 0.69 | 0.996045 |
Target: 5'- aGAUACCGGGcuuuGGAUGaACAUuUCCCCUu -3' miRNA: 3'- -CUAUGGCCU----UUUAU-UGUAuGGGGGGu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 57545 | 0.68 | 0.997175 |
Target: 5'- -cUACCaaGAAAUGACAaACCUCCCAc -3' miRNA: 3'- cuAUGGccUUUUAUUGUaUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 149562 | 0.67 | 0.998327 |
Target: 5'- uGAUGCgGGAGAGgauGCGUguucgagauucgaACCCCCgGa -3' miRNA: 3'- -CUAUGgCCUUUUau-UGUA-------------UGGGGGgU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 143536 | 0.67 | 0.998359 |
Target: 5'- --cACUGGAgcgcgGAGUGGgGgaacGCCCCCCAg -3' miRNA: 3'- cuaUGGCCU-----UUUAUUgUa---UGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 131072 | 0.67 | 0.999093 |
Target: 5'- cAUGCCGGGAAGcAGgGUAUgUCCCGu -3' miRNA: 3'- cUAUGGCCUUUUaUUgUAUGgGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 151567 | 0.66 | 0.999623 |
Target: 5'- uGUACCaGAGGA-GACAaucCCCCCCGu -3' miRNA: 3'- cUAUGGcCUUUUaUUGUau-GGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 123766 | 0.66 | 0.999515 |
Target: 5'- --aGCCGGcauggagAAAGUGAauauCCCCCCAc -3' miRNA: 3'- cuaUGGCC-------UUUUAUUguauGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 93165 | 0.67 | 0.999093 |
Target: 5'- aGUACCGGGgucGGAUuauGCAUACCCUa-- -3' miRNA: 3'- cUAUGGCCU---UUUAu--UGUAUGGGGggu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 131186 | 0.71 | 0.981675 |
Target: 5'- cGGUACgagaggCGGggGAUGGCAgacACCaCCCCGg -3' miRNA: 3'- -CUAUG------GCCuuUUAUUGUa--UGG-GGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 127639 | 0.66 | 0.999526 |
Target: 5'- --aGCUGGGuucu-GCGUugCCCCCc -3' miRNA: 3'- cuaUGGCCUuuuauUGUAugGGGGGu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 155317 | 0.7 | 0.991553 |
Target: 5'- --cACCuGGggGAUGAUAUGCCCgugCCUAc -3' miRNA: 3'- cuaUGG-CCuuUUAUUGUAUGGG---GGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 95472 | 0.67 | 0.998747 |
Target: 5'- --aACUGGAGGGU--CAUugcucgccaaagaagGCCCCCCAg -3' miRNA: 3'- cuaUGGCCUUUUAuuGUA---------------UGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 126271 | 0.66 | 0.999623 |
Target: 5'- ----aCGGAcuGUcacGACAUGCCCCCa- -3' miRNA: 3'- cuaugGCCUuuUA---UUGUAUGGGGGgu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 12742 | 0.66 | 0.999702 |
Target: 5'- aGUGCCGGAc-AUGAguUGCCCgCUAc -3' miRNA: 3'- cUAUGGCCUuuUAUUguAUGGGgGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 134195 | 0.69 | 0.995355 |
Target: 5'- ----aCGGccauAGGUAACGcGCCCCCCAu -3' miRNA: 3'- cuaugGCCu---UUUAUUGUaUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 48082 | 0.68 | 0.997794 |
Target: 5'- -uUGCUGGAGucuaaaacguugaucGAgcGCAUGgCCCCCAg -3' miRNA: 3'- cuAUGGCCUU---------------UUauUGUAUgGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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