Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9879 | 3' | -47.8 | NC_002641.1 | + | 104000 | 1.09 | 0.017922 |
Target: 5'- uGAUACCGGAAAAUAACAUACCCCCCAc -3' miRNA: 3'- -CUAUGGCCUUUUAUUGUAUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 114943 | 0.81 | 0.599449 |
Target: 5'- cGGUGCa-GAAGAUAACAaGCCCCCCAg -3' miRNA: 3'- -CUAUGgcCUUUUAUUGUaUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 153947 | 0.72 | 0.964939 |
Target: 5'- --cACCGGggGGUAguuuccgcgcGCccGCCCCCCu -3' miRNA: 3'- cuaUGGCCuuUUAU----------UGuaUGGGGGGu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 128526 | 0.72 | 0.964939 |
Target: 5'- --cACCGGggGGUAguuuccgcgcGCccGCCCCCCu -3' miRNA: 3'- cuaUGGCCuuUUAU----------UGuaUGGGGGGu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 151286 | 0.71 | 0.981675 |
Target: 5'- cGGUACgagaggCGGggGAUGGCAgacACCaCCCCGg -3' miRNA: 3'- -CUAUG------GCCuuUUAUUGUa--UGG-GGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 131186 | 0.71 | 0.981675 |
Target: 5'- cGGUACgagaggCGGggGAUGGCAgacACCaCCCCGg -3' miRNA: 3'- -CUAUG------GCCuuUUAUUGUa--UGG-GGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 13603 | 0.7 | 0.990296 |
Target: 5'- --cACgGGcgGGUAACAUAUCCCUCGu -3' miRNA: 3'- cuaUGgCCuuUUAUUGUAUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 127156 | 0.7 | 0.991553 |
Target: 5'- --cACCuGGggGAUGAUAUGCCCgugCCUAc -3' miRNA: 3'- cuaUGG-CCuuUUAUUGUAUGGG---GGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 155317 | 0.7 | 0.991553 |
Target: 5'- --cACCuGGggGAUGAUAUGCCCgugCCUAc -3' miRNA: 3'- cuaUGG-CCuuUUAUUGUAUGGG---GGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 103354 | 0.69 | 0.992679 |
Target: 5'- gGGUGCCGGGAuau--CAUAUCCCgCGu -3' miRNA: 3'- -CUAUGGCCUUuuauuGUAUGGGGgGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 81145 | 0.69 | 0.993681 |
Target: 5'- --gGCCGcu-----GCAUACCCCCCGa -3' miRNA: 3'- cuaUGGCcuuuuauUGUAUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 31435 | 0.69 | 0.99457 |
Target: 5'- --aACUcGAAAAUAACcgACCCCUCGa -3' miRNA: 3'- cuaUGGcCUUUUAUUGuaUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 134195 | 0.69 | 0.995355 |
Target: 5'- ----aCGGccauAGGUAACGcGCCCCCCAu -3' miRNA: 3'- cuaugGCCu---UUUAUUGUaUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 148277 | 0.69 | 0.995355 |
Target: 5'- ----aCGGccauAGGUAACGcGCCCCCCAu -3' miRNA: 3'- cuaugGCCu---UUUAUUGUaUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 54651 | 0.69 | 0.996045 |
Target: 5'- aGAUACCGGGcuuuGGAUGaACAUuUCCCCUu -3' miRNA: 3'- -CUAUGGCCU----UUUAU-UGUAuGGGGGGu -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 57545 | 0.68 | 0.997175 |
Target: 5'- -cUACCaaGAAAUGACAaACCUCCCAc -3' miRNA: 3'- cuAUGGccUUUUAUUGUaUGGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 48082 | 0.68 | 0.997794 |
Target: 5'- -uUGCUGGAGucuaaaacguugaucGAgcGCAUGgCCCCCAg -3' miRNA: 3'- cuAUGGCCUU---------------UUauUGUAUgGGGGGU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 132911 | 0.67 | 0.998327 |
Target: 5'- uGAUGCgGGAGAGgauGCGUguucgagauucgaACCCCCgGa -3' miRNA: 3'- -CUAUGgCCUUUUau-UGUA-------------UGGGGGgU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 149562 | 0.67 | 0.998327 |
Target: 5'- uGAUGCgGGAGAGgauGCGUguucgagauucgaACCCCCgGa -3' miRNA: 3'- -CUAUGgCCUUUUau-UGUA-------------UGGGGGgU- -5' |
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9879 | 3' | -47.8 | NC_002641.1 | + | 143536 | 0.67 | 0.998359 |
Target: 5'- --cACUGGAgcgcgGAGUGGgGgaacGCCCCCCAg -3' miRNA: 3'- cuaUGGCCU-----UUUAUUgUa---UGGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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