miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9879 3' -47.8 NC_002641.1 + 3702 0.66 0.999623
Target:  5'- uGGUuuCCGGuAAAUAuaaaggaGUACCCCCCc -3'
miRNA:   3'- -CUAu-GGCCuUUUAUug-----UAUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 12742 0.66 0.999702
Target:  5'- aGUGCCGGAc-AUGAguUGCCCgCUAc -3'
miRNA:   3'- cUAUGGCCUuuUAUUguAUGGGgGGU- -5'
9879 3' -47.8 NC_002641.1 + 13603 0.7 0.990296
Target:  5'- --cACgGGcgGGUAACAUAUCCCUCGu -3'
miRNA:   3'- cuaUGgCCuuUUAUUGUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 31435 0.69 0.99457
Target:  5'- --aACUcGAAAAUAACcgACCCCUCGa -3'
miRNA:   3'- cuaUGGcCUUUUAUUGuaUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 41242 0.66 0.999526
Target:  5'- aGUAUCGGcGAuuAUGGCAUGCcaauuuCCCCCGg -3'
miRNA:   3'- cUAUGGCCuUU--UAUUGUAUG------GGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 48082 0.68 0.997794
Target:  5'- -uUGCUGGAGucuaaaacguugaucGAgcGCAUGgCCCCCAg -3'
miRNA:   3'- cuAUGGCCUU---------------UUauUGUAUgGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 48876 0.67 0.999035
Target:  5'- --gGCCGGGugugauuccAAGUGGuCAUuucccauaauccugGCCCCCCAa -3'
miRNA:   3'- cuaUGGCCU---------UUUAUU-GUA--------------UGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 49596 0.66 0.999766
Target:  5'- aGUAUUGGuAAAAUAuCGaguguUGCCCCCCGc -3'
miRNA:   3'- cUAUGGCC-UUUUAUuGU-----AUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 54651 0.69 0.996045
Target:  5'- aGAUACCGGGcuuuGGAUGaACAUuUCCCCUu -3'
miRNA:   3'- -CUAUGGCCU----UUUAU-UGUAuGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 57545 0.68 0.997175
Target:  5'- -cUACCaaGAAAUGACAaACCUCCCAc -3'
miRNA:   3'- cuAUGGccUUUUAUUGUaUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 81145 0.69 0.993681
Target:  5'- --gGCCGcu-----GCAUACCCCCCGa -3'
miRNA:   3'- cuaUGGCcuuuuauUGUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 93165 0.67 0.999093
Target:  5'- aGUACCGGGgucGGAUuauGCAUACCCUa-- -3'
miRNA:   3'- cUAUGGCCU---UUUAu--UGUAUGGGGggu -5'
9879 3' -47.8 NC_002641.1 + 95472 0.67 0.998747
Target:  5'- --aACUGGAGGGU--CAUugcucgccaaagaagGCCCCCCAg -3'
miRNA:   3'- cuaUGGCCUUUUAuuGUA---------------UGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 101028 0.67 0.999265
Target:  5'- aGUACCGaGAAcuuUAACGaugcaaUACCCCCUg -3'
miRNA:   3'- cUAUGGC-CUUuu-AUUGU------AUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 103354 0.69 0.992679
Target:  5'- gGGUGCCGGGAuau--CAUAUCCCgCGu -3'
miRNA:   3'- -CUAUGGCCUUuuauuGUAUGGGGgGU- -5'
9879 3' -47.8 NC_002641.1 + 104000 1.09 0.017922
Target:  5'- uGAUACCGGAAAAUAACAUACCCCCCAc -3'
miRNA:   3'- -CUAUGGCCUUUUAUUGUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 114943 0.81 0.599449
Target:  5'- cGGUGCa-GAAGAUAACAaGCCCCCCAg -3'
miRNA:   3'- -CUAUGgcCUUUUAUUGUaUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 117319 0.66 0.999702
Target:  5'- aGGUuCCGGcgaGAAAUGACAUGCUCgaUCCAa -3'
miRNA:   3'- -CUAuGGCC---UUUUAUUGUAUGGG--GGGU- -5'
9879 3' -47.8 NC_002641.1 + 120021 0.66 0.999623
Target:  5'- uGGUuuCCGGuAAAUAuaaaggaGUACCCCCCc -3'
miRNA:   3'- -CUAu-GGCCuUUUAUug-----UAUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 120749 0.66 0.999623
Target:  5'- ---cUCGGGAcAUGACcuUACUCCCCAu -3'
miRNA:   3'- cuauGGCCUUuUAUUGu-AUGGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.