miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9879 3' -47.8 NC_002641.1 + 127156 0.7 0.991553
Target:  5'- --cACCuGGggGAUGAUAUGCCCgugCCUAc -3'
miRNA:   3'- cuaUGG-CCuuUUAUUGUAUGGG---GGGU- -5'
9879 3' -47.8 NC_002641.1 + 152799 0.67 0.999265
Target:  5'- --gGCCGGGucGGUGACcgccgACCCCaCCGa -3'
miRNA:   3'- cuaUGGCCUu-UUAUUGua---UGGGG-GGU- -5'
9879 3' -47.8 NC_002641.1 + 151400 0.67 0.999093
Target:  5'- cAUGCCGGGAAGcAGgGUAUgUCCCGu -3'
miRNA:   3'- cUAUGGCCUUUUaUUgUAUGgGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 48876 0.67 0.999035
Target:  5'- --gGCCGGGugugauuccAAGUGGuCAUuucccauaauccugGCCCCCCAa -3'
miRNA:   3'- cuaUGGCCU---------UUUAUU-GUA--------------UGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 132911 0.67 0.998327
Target:  5'- uGAUGCgGGAGAGgauGCGUguucgagauucgaACCCCCgGa -3'
miRNA:   3'- -CUAUGgCCUUUUau-UGUA-------------UGGGGGgU- -5'
9879 3' -47.8 NC_002641.1 + 148277 0.69 0.995355
Target:  5'- ----aCGGccauAGGUAACGcGCCCCCCAu -3'
miRNA:   3'- cuaugGCCu---UUUAUUGUaUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 31435 0.69 0.99457
Target:  5'- --aACUcGAAAAUAACcgACCCCUCGa -3'
miRNA:   3'- cuaUGGcCUUUUAUUGuaUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 81145 0.69 0.993681
Target:  5'- --gGCCGcu-----GCAUACCCCCCGa -3'
miRNA:   3'- cuaUGGCcuuuuauUGUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 103354 0.69 0.992679
Target:  5'- gGGUGCCGGGAuau--CAUAUCCCgCGu -3'
miRNA:   3'- -CUAUGGCCUUuuauuGUAUGGGGgGU- -5'
9879 3' -47.8 NC_002641.1 + 101028 0.67 0.999265
Target:  5'- aGUACCGaGAAcuuUAACGaugcaaUACCCCCUg -3'
miRNA:   3'- cUAUGGC-CUUuu-AUUGU------AUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 158706 0.66 0.999515
Target:  5'- --aGCCGGcauggagAAAGUGAauauCCCCCCAc -3'
miRNA:   3'- cuaUGGCC-------UUUUAUUguauGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 41242 0.66 0.999526
Target:  5'- aGUAUCGGcGAuuAUGGCAUGCcaauuuCCCCCGg -3'
miRNA:   3'- cUAUGGCCuUU--UAUUGUAUG------GGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 136082 0.66 0.999755
Target:  5'- --cGCCGGGAAGUGuaaauugucgacGCAaacggaaauccCCCCCCAc -3'
miRNA:   3'- cuaUGGCCUUUUAU------------UGUau---------GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 126413 0.66 0.999702
Target:  5'- --cGCCcGAAAAggAGgAUAUCCCCCAu -3'
miRNA:   3'- cuaUGGcCUUUUa-UUgUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 143740 0.66 0.999702
Target:  5'- cAUACCGGcGAGgacuggggGGCGU-UCCCCCAc -3'
miRNA:   3'- cUAUGGCCuUUUa-------UUGUAuGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 120021 0.66 0.999623
Target:  5'- uGGUuuCCGGuAAAUAuaaaggaGUACCCCCCc -3'
miRNA:   3'- -CUAu-GGCCuUUUAUug-----UAUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 130906 0.66 0.999623
Target:  5'- uGUACCaGAGGA-GACAaucCCCCCCGu -3'
miRNA:   3'- cUAUGGcCUUUUaUUGUau-GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 156201 0.66 0.999623
Target:  5'- ----aCGGAcuGUcacGACAUGCCCCCa- -3'
miRNA:   3'- cuaugGCCUuuUA---UUGUAUGGGGGgu -5'
9879 3' -47.8 NC_002641.1 + 120749 0.66 0.999623
Target:  5'- ---cUCGGGAcAUGACcuUACUCCCCAu -3'
miRNA:   3'- cuauGGCCUUuUAUUGu-AUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 154834 0.66 0.999526
Target:  5'- --aGCUGGGuucu-GCGUugCCCCCc -3'
miRNA:   3'- cuaUGGCCUuuuauUGUAugGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.