Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9889 | 3' | -52.8 | NC_002641.1 | + | 152346 | 0.66 | 0.979583 |
Target: 5'- cGGGAcgaCCGCGGGCccuuCGUGGCgaagGUg -3' miRNA: 3'- aUCUUag-GGCGCCUGuu--GCAUCGa---CG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 157011 | 0.66 | 0.974668 |
Target: 5'- -cGAGUCCUaCGG-CGGCagAGCUGCg -3' miRNA: 3'- auCUUAGGGcGCCuGUUGcaUCGACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 130126 | 0.66 | 0.979583 |
Target: 5'- cGGGAcgaCCGCGGGCccuuCGUGGCgaagGUg -3' miRNA: 3'- aUCUUag-GGCGCCUGuu--GCAUCGa---CG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 98224 | 0.66 | 0.974668 |
Target: 5'- ---uGUCCUGCGGGCuuguuACGgcGCcauUGCa -3' miRNA: 3'- aucuUAGGGCGCCUGu----UGCauCG---ACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 125461 | 0.66 | 0.974668 |
Target: 5'- -cGAGUCCUaCGG-CGGCagAGCUGCg -3' miRNA: 3'- auCUUAGGGcGCCuGUUGcaUCGACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 101750 | 0.66 | 0.977223 |
Target: 5'- aAGAGUuccucuauccCCCuaGGACAACG-AGCUcGCc -3' miRNA: 3'- aUCUUA----------GGGcgCCUGUUGCaUCGA-CG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 63544 | 0.66 | 0.979583 |
Target: 5'- gAGGAUgaaCCCGUGGAgGcccgcuaaGCGUAGCaaGCa -3' miRNA: 3'- aUCUUA---GGGCGCCUgU--------UGCAUCGa-CG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 157204 | 0.67 | 0.958717 |
Target: 5'- cGGcggCUCGCuGGCAACGgcGCUGUa -3' miRNA: 3'- aUCuuaGGGCGcCUGUUGCauCGACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 121112 | 0.67 | 0.95074 |
Target: 5'- aUGGAucUCUCGCGGGguGCGUAGgCgUGUg -3' miRNA: 3'- -AUCUu-AGGGCGCCUguUGCAUC-G-ACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 121742 | 0.67 | 0.946389 |
Target: 5'- uUGGGcguauUUUCuCGGugAGCGUAGCUGCc -3' miRNA: 3'- -AUCUu----AGGGcGCCugUUGCAUCGACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 158738 | 0.67 | 0.962353 |
Target: 5'- aUAGAauuuucccAUUCCGCGGACAGaccCGcAGCcgGCa -3' miRNA: 3'- -AUCU--------UAGGGCGCCUGUU---GCaUCGa-CG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 125268 | 0.67 | 0.958717 |
Target: 5'- cGGcggCUCGCuGGCAACGgcGCUGUa -3' miRNA: 3'- aUCuuaGGGCGcCUGUUGCauCGACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 103047 | 0.67 | 0.946389 |
Target: 5'- cGGAGgcUCCCGauCGGGCGGCG--GUUGCa -3' miRNA: 3'- aUCUU--AGGGC--GCCUGUUGCauCGACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 2610 | 0.67 | 0.95074 |
Target: 5'- aUGGAucUCUCGCGGGguGCGUAGgCgUGUg -3' miRNA: 3'- -AUCUu-AGGGCGCCUguUGCAUC-G-ACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 66837 | 0.68 | 0.941794 |
Target: 5'- aUGGAcggCCGCGGGCAACGguuCUGUg -3' miRNA: 3'- -AUCUuagGGCGCCUGUUGCaucGACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 61239 | 0.69 | 0.902629 |
Target: 5'- cGGAAUUCgUGCGGA--ACGUGGCgGCu -3' miRNA: 3'- aUCUUAGG-GCGCCUguUGCAUCGaCG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 124799 | 0.69 | 0.896041 |
Target: 5'- cAGAAUCCaCGCGGaagggaGCGAUGccggcAGCUGUg -3' miRNA: 3'- aUCUUAGG-GCGCC------UGUUGCa----UCGACG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 136542 | 0.7 | 0.851593 |
Target: 5'- uUGGAAUguacaCCCGCGGACGuccACGcGGCaGCc -3' miRNA: 3'- -AUCUUA-----GGGCGCCUGU---UGCaUCGaCG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 145931 | 0.7 | 0.851593 |
Target: 5'- uUGGAAUguacaCCCGCGGACGuccACGcGGCaGCc -3' miRNA: 3'- -AUCUUA-----GGGCGCCUGU---UGCaUCGaCG- -5' |
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9889 | 3' | -52.8 | NC_002641.1 | + | 121971 | 0.7 | 0.85956 |
Target: 5'- cGGAcucAUUCaGCGGGCAAUGUAGaCUGUg -3' miRNA: 3'- aUCU---UAGGgCGCCUGUUGCAUC-GACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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