miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9889 3' -52.8 NC_002641.1 + 1246 0.88 0.1259
Target:  5'- cAGAAaCCCaGCGGGCAACGUGGCUGUu -3'
miRNA:   3'- aUCUUaGGG-CGCCUGUUGCAUCGACG- -5'
9889 3' -52.8 NC_002641.1 + 1527 0.85 0.186474
Target:  5'- cAGAAaCCCaGCGGGCAAUGUAGCUGUc -3'
miRNA:   3'- aUCUUaGGG-CGCCUGUUGCAUCGACG- -5'
9889 3' -52.8 NC_002641.1 + 1751 0.7 0.85956
Target:  5'- cGGAcucAUUCaGCGGGCAAUGUAGaCUGUg -3'
miRNA:   3'- aUCU---UAGGgCGCCUGUUGCAUC-GACG- -5'
9889 3' -52.8 NC_002641.1 + 1753 1.1 0.004776
Target:  5'- cUAGAAUCCCGCGGACAACGUAGCUGCu -3'
miRNA:   3'- -AUCUUAGGGCGCCUGUUGCAUCGACG- -5'
9889 3' -52.8 NC_002641.1 + 1970 0.72 0.761767
Target:  5'- ----uUCUC-CGGugAGCGUAGCUGCc -3'
miRNA:   3'- aucuuAGGGcGCCugUUGCAUCGACG- -5'
9889 3' -52.8 NC_002641.1 + 2069 0.87 0.147573
Target:  5'- cUAG-AUCCCuGCGGACAAUGUAGCUGUu -3'
miRNA:   3'- -AUCuUAGGG-CGCCUGUUGCAUCGACG- -5'
9889 3' -52.8 NC_002641.1 + 2294 0.72 0.781001
Target:  5'- cGGuccuUCUCGCGGAUAGCGUAGaUGUc -3'
miRNA:   3'- aUCuu--AGGGCGCCUGUUGCAUCgACG- -5'
9889 3' -52.8 NC_002641.1 + 2388 0.77 0.495159
Target:  5'- -cGAAUCCUGCGGAUuACaUAGCUGUu -3'
miRNA:   3'- auCUUAGGGCGCCUGuUGcAUCGACG- -5'
9889 3' -52.8 NC_002641.1 + 2610 0.67 0.95074
Target:  5'- aUGGAucUCUCGCGGGguGCGUAGgCgUGUg -3'
miRNA:   3'- -AUCUu-AGGGCGCCUguUGCAUC-G-ACG- -5'
9889 3' -52.8 NC_002641.1 + 5120 0.73 0.721931
Target:  5'- ----uUCCCGCGcGGCAACcaccgAGCUGCg -3'
miRNA:   3'- aucuuAGGGCGC-CUGUUGca---UCGACG- -5'
9889 3' -52.8 NC_002641.1 + 60476 0.71 0.826468
Target:  5'- -----cCCCGCGGGCGACGgcGUcgauauUGCg -3'
miRNA:   3'- aucuuaGGGCGCCUGUUGCauCG------ACG- -5'
9889 3' -52.8 NC_002641.1 + 61239 0.69 0.902629
Target:  5'- cGGAAUUCgUGCGGA--ACGUGGCgGCu -3'
miRNA:   3'- aUCUUAGG-GCGCCUguUGCAUCGaCG- -5'
9889 3' -52.8 NC_002641.1 + 63544 0.66 0.979583
Target:  5'- gAGGAUgaaCCCGUGGAgGcccgcuaaGCGUAGCaaGCa -3'
miRNA:   3'- aUCUUA---GGGCGCCUgU--------UGCAUCGa-CG- -5'
9889 3' -52.8 NC_002641.1 + 66837 0.68 0.941794
Target:  5'- aUGGAcggCCGCGGGCAACGguuCUGUg -3'
miRNA:   3'- -AUCUuagGGCGCCUGUUGCaucGACG- -5'
9889 3' -52.8 NC_002641.1 + 98224 0.66 0.974668
Target:  5'- ---uGUCCUGCGGGCuuguuACGgcGCcauUGCa -3'
miRNA:   3'- aucuUAGGGCGCCUGu----UGCauCG---ACG- -5'
9889 3' -52.8 NC_002641.1 + 101750 0.66 0.977223
Target:  5'- aAGAGUuccucuauccCCCuaGGACAACG-AGCUcGCc -3'
miRNA:   3'- aUCUUA----------GGGcgCCUGUUGCaUCGA-CG- -5'
9889 3' -52.8 NC_002641.1 + 103047 0.67 0.946389
Target:  5'- cGGAGgcUCCCGauCGGGCGGCG--GUUGCa -3'
miRNA:   3'- aUCUU--AGGGC--GCCUGUUGCauCGACG- -5'
9889 3' -52.8 NC_002641.1 + 118602 0.73 0.721931
Target:  5'- ----uUCCCGCGcGGCAACcaccgAGCUGCg -3'
miRNA:   3'- aucuuAGGGCGC-CUGUUGca---UCGACG- -5'
9889 3' -52.8 NC_002641.1 + 121112 0.67 0.95074
Target:  5'- aUGGAucUCUCGCGGGguGCGUAGgCgUGUg -3'
miRNA:   3'- -AUCUu-AGGGCGCCUguUGCAUC-G-ACG- -5'
9889 3' -52.8 NC_002641.1 + 121334 0.77 0.495159
Target:  5'- -cGAAUCCUGCGGAUuACaUAGCUGUu -3'
miRNA:   3'- auCUUAGGGCGCCUGuUGcAUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.