miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9922 5' -50.1 NC_002641.1 + 51679 0.67 0.988375
Target:  5'- ---gGGUCUGgAUUGUUgGCUGAAUGc -3'
miRNA:   3'- ugugUCAGAUgUAACGGgCGACUUAC- -5'
9922 5' -50.1 NC_002641.1 + 121468 0.7 0.943421
Target:  5'- -aACAG-CUACAUUGUCCGCagGGAUc -3'
miRNA:   3'- ugUGUCaGAUGUAACGGGCGa-CUUAc -5'
9922 5' -50.1 NC_002641.1 + 2255 0.7 0.943421
Target:  5'- -aACAG-CUACAUUGUCCGCagGGAUc -3'
miRNA:   3'- ugUGUCaGAUGUAACGGGCGa-CUUAc -5'
9922 5' -50.1 NC_002641.1 + 110804 0.7 0.938536
Target:  5'- aACACAGaCUGCAacucCCCGCUGcAAUGa -3'
miRNA:   3'- -UGUGUCaGAUGUaac-GGGCGAC-UUAC- -5'
9922 5' -50.1 NC_002641.1 + 1938 0.72 0.896969
Target:  5'- -aGCAG-CUACGUUGUCCGCgGGAUu -3'
miRNA:   3'- ugUGUCaGAUGUAACGGGCGaCUUAc -5'
9922 5' -50.1 NC_002641.1 + 81981 0.72 0.896969
Target:  5'- gGCAUAcGUCU-UAUUGCCCGCaccguUGGAUGg -3'
miRNA:   3'- -UGUGU-CAGAuGUAACGGGCG-----ACUUAC- -5'
9922 5' -50.1 NC_002641.1 + 121784 0.72 0.896969
Target:  5'- -aGCAG-CUACGUUGUCCGCgGGAUu -3'
miRNA:   3'- ugUGUCaGAUGUAACGGGCGaCUUAc -5'
9922 5' -50.1 NC_002641.1 + 122440 0.74 0.825626
Target:  5'- -gACGGUCUAUGUUGUaCGCUGAAUa -3'
miRNA:   3'- ugUGUCAGAUGUAACGgGCGACUUAc -5'
9922 5' -50.1 NC_002641.1 + 1282 0.74 0.825626
Target:  5'- -gACGGUCUAUGUUGUaCGCUGAAUa -3'
miRNA:   3'- ugUGUCAGAUGUAACGgGCGACUUAc -5'
9922 5' -50.1 NC_002641.1 + 1435 0.76 0.718018
Target:  5'- gGCaACAGcC-ACGUUGCCCGCUGggUu -3'
miRNA:   3'- -UG-UGUCaGaUGUAACGGGCGACuuAc -5'
9922 5' -50.1 NC_002641.1 + 122288 0.76 0.718018
Target:  5'- gGCaACAGcC-ACGUUGCCCGCUGggUu -3'
miRNA:   3'- -UG-UGUCaGaUGUAACGGGCGACuuAc -5'
9922 5' -50.1 NC_002641.1 + 1712 0.85 0.280728
Target:  5'- -gACAG-CUACAUUGCCCGCUGggUu -3'
miRNA:   3'- ugUGUCaGAUGUAACGGGCGACuuAc -5'
9922 5' -50.1 NC_002641.1 + 122010 0.85 0.280728
Target:  5'- -gACAG-CUACAUUGCCCGCUGggUu -3'
miRNA:   3'- ugUGUCaGAUGUAACGGGCGACuuAc -5'
9922 5' -50.1 NC_002641.1 + 1561 1.09 0.009511
Target:  5'- uACACAGUCUACAUUGCCCGCUGAAUGa -3'
miRNA:   3'- -UGUGUCAGAUGUAACGGGCGACUUAC- -5'
9922 5' -50.1 NC_002641.1 + 122162 1.09 0.009511
Target:  5'- uACACAGUCUACAUUGCCCGCUGAAUGa -3'
miRNA:   3'- -UGUGUCAGAUGUAACGGGCGACUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.