miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9959 3' -53.5 NC_002641.1 + 158652 0.66 0.963451
Target:  5'- cCGaCAGGG-AACu--UCCCUUCGCCCa -3'
miRNA:   3'- -GC-GUUCCaUUGuuuAGGGGGGUGGGg -5'
9959 3' -53.5 NC_002641.1 + 149976 0.66 0.972675
Target:  5'- uGCuucu--AUGAA-CCCCCCGCCCCc -3'
miRNA:   3'- gCGuuccauUGUUUaGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 5215 0.66 0.976348
Target:  5'- gCGCGuacucgggcccGGGgcGCAuuugucaguuuuuacAGUCcgccgcuaCCCCCGCCCCc -3'
miRNA:   3'- -GCGU-----------UCCauUGU---------------UUAG--------GGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 133765 0.68 0.923469
Target:  5'- gGCGGGGggguGC----UUCCCCACCCCc -3'
miRNA:   3'- gCGUUCCau--UGuuuaGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 58568 0.68 0.923469
Target:  5'- gGCGAGGaaaaauugUGcCAAAUCUCCaaACCCCg -3'
miRNA:   3'- gCGUUCC--------AUuGUUUAGGGGggUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 114948 0.66 0.966738
Target:  5'- uGCGAcGGUGcagaagauaACAAG-CCCCCCAgagaguucaaaUCCCa -3'
miRNA:   3'- gCGUU-CCAU---------UGUUUaGGGGGGU-----------GGGG- -5'
9959 3' -53.5 NC_002641.1 + 148397 1.11 0.003798
Target:  5'- gCGCAAGGUAACAAAUCCCCCCACCCCc -3'
miRNA:   3'- -GCGUUCCAUUGUUUAGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 143734 0.75 0.60747
Target:  5'- gGCGAGGacUGGgGGgcGUUCCCCCACUCCg -3'
miRNA:   3'- gCGUUCC--AUUgUU--UAGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 148275 0.66 0.966738
Target:  5'- gGCcauAGGUAACGcg-CCCCCCAUaauuacaaaaCCUa -3'
miRNA:   3'- gCGu--UCCAUUGUuuaGGGGGGUG----------GGG- -5'
9959 3' -53.5 NC_002641.1 + 39457 0.67 0.952248
Target:  5'- uGCAAcGGcAACA--UUCCCCUGCCUCu -3'
miRNA:   3'- gCGUU-CCaUUGUuuAGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 126907 0.67 0.948051
Target:  5'- uGCGGGaacACGGuacUCCCCCCGgauCCCCa -3'
miRNA:   3'- gCGUUCcauUGUUu--AGGGGGGU---GGGG- -5'
9959 3' -53.5 NC_002641.1 + 104925 0.68 0.923469
Target:  5'- gCGCGuucGUAAUuucauGUCCgCCCCGCCCa -3'
miRNA:   3'- -GCGUuc-CAUUGuu---UAGG-GGGGUGGGg -5'
9959 3' -53.5 NC_002641.1 + 148707 0.68 0.923469
Target:  5'- gGCGGGGggguGC----UUCCCCACCCCc -3'
miRNA:   3'- gCGUUCCau--UGuuuaGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 80591 0.68 0.917824
Target:  5'- uGCGAGuGaAACA--UCCCCCguCCCUa -3'
miRNA:   3'- gCGUUC-CaUUGUuuAGGGGGguGGGG- -5'
9959 3' -53.5 NC_002641.1 + 134081 0.7 0.871641
Target:  5'- uGCGAGGgu-----UCUCCCCcCCCCa -3'
miRNA:   3'- gCGUUCCauuguuuAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 35134 0.7 0.840354
Target:  5'- aGCcgauGAGGUAA-AGAUCCCCCgauCACCCg -3'
miRNA:   3'- gCG----UUCCAUUgUUUAGGGGG---GUGGGg -5'
9959 3' -53.5 NC_002641.1 + 131543 0.71 0.823527
Target:  5'- --uGGGGUccugaaAACGAAUgCCCUCUACCCCg -3'
miRNA:   3'- gcgUUCCA------UUGUUUA-GGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 133958 0.72 0.769063
Target:  5'- gGCAguacaaggGGGUGGgGAAgcacCCCCCCGCCgCa -3'
miRNA:   3'- gCGU--------UCCAUUgUUUa---GGGGGGUGGgG- -5'
9959 3' -53.5 NC_002641.1 + 64073 0.73 0.720181
Target:  5'- uGCAAGGUAGCAug-CCgUuugCUACCCCa -3'
miRNA:   3'- gCGUUCCAUUGUuuaGGgG---GGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 70391 0.73 0.710136
Target:  5'- uCGCAucguGGaAACAGAuacUUCCCCaCACCCCc -3'
miRNA:   3'- -GCGUu---CCaUUGUUU---AGGGGG-GUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.