miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9959 3' -53.5 NC_002641.1 + 134075 1.11 0.003798
Target:  5'- gCGCAAGGUAACAAAUCCCCCCACCCCc -3'
miRNA:   3'- -GCGUUCCAUUGUUUAGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 158652 0.66 0.963451
Target:  5'- cCGaCAGGG-AACu--UCCCUUCGCCCa -3'
miRNA:   3'- -GC-GUUCCaUUGuuuAGGGGGGUGGGg -5'
9959 3' -53.5 NC_002641.1 + 134197 0.66 0.966738
Target:  5'- gGCcauAGGUAACGcg-CCCCCCAUaauuacaaaaCCUa -3'
miRNA:   3'- gCGu--UCCAUUGUuuaGGGGGGUG----------GGG- -5'
9959 3' -53.5 NC_002641.1 + 5215 0.66 0.976348
Target:  5'- gCGCGuacucgggcccGGGgcGCAuuugucaguuuuuacAGUCcgccgcuaCCCCCGCCCCc -3'
miRNA:   3'- -GCGU-----------UCCauUGU---------------UUAG--------GGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 101938 0.72 0.778504
Target:  5'- uGCAAGuGUGuaucGCuguAUCUCCCCuCCCCa -3'
miRNA:   3'- gCGUUC-CAU----UGuu-UAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 24486 0.71 0.80599
Target:  5'- aGguAGGUGACAAAUCCagCUAUUCCg -3'
miRNA:   3'- gCguUCCAUUGUUUAGGggGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 148392 0.7 0.871641
Target:  5'- uGCGAGGgu-----UCUCCCCcCCCCa -3'
miRNA:   3'- gCGUUCCauuguuuAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 149303 0.68 0.911936
Target:  5'- cCGCAGGGaUGGCA--UCCCCuucagaauaugaCCAuguCCCCg -3'
miRNA:   3'- -GCGUUCC-AUUGUuuAGGGG------------GGU---GGGG- -5'
9959 3' -53.5 NC_002641.1 + 133765 0.68 0.923469
Target:  5'- gGCGGGGggguGC----UUCCCCACCCCc -3'
miRNA:   3'- gCGUUCCau--UGuuuaGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 151573 0.66 0.963451
Target:  5'- --aGAGGaGAC-AAUCCCCCCcguCCUCu -3'
miRNA:   3'- gcgUUCCaUUGuUUAGGGGGGu--GGGG- -5'
9959 3' -53.5 NC_002641.1 + 155566 0.67 0.948051
Target:  5'- uGCGGGaacACGGuacUCCCCCCGgauCCCCa -3'
miRNA:   3'- gCGUUCcauUGUUu--AGGGGGGU---GGGG- -5'
9959 3' -53.5 NC_002641.1 + 58568 0.68 0.923469
Target:  5'- gGCGAGGaaaaauugUGcCAAAUCUCCaaACCCCg -3'
miRNA:   3'- gCGUUCC--------AUuGUUUAGGGGggUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 89127 0.77 0.487067
Target:  5'- uCGCAAGGUGAUAAucgaaUCCUCgACCCCa -3'
miRNA:   3'- -GCGUUCCAUUGUUua---GGGGGgUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 56331 0.67 0.952248
Target:  5'- uCGUc-GGgcGCGGcuGUCCUCCC-CCCCa -3'
miRNA:   3'- -GCGuuCCauUGUU--UAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 76759 0.73 0.730149
Target:  5'- uCGC-GGGcGACAuucCCCCaCCACCCCc -3'
miRNA:   3'- -GCGuUCCaUUGUuuaGGGG-GGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 5318 0.68 0.917824
Target:  5'- uGCAgauAGGgcACcccauccgCCCCCCuCCCCu -3'
miRNA:   3'- gCGU---UCCauUGuuua----GGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 143543 0.66 0.963451
Target:  5'- gCGCGGaGUGGgGGAacgCCCCCCAgUCCu -3'
miRNA:   3'- -GCGUUcCAUUgUUUa--GGGGGGUgGGG- -5'
9959 3' -53.5 NC_002641.1 + 86397 0.66 0.966738
Target:  5'- aGCAAGGUGACAAGUgCCggggaaCUGCuuagaCCCa -3'
miRNA:   3'- gCGUUCCAUUGUUUAgGGg-----GGUG-----GGG- -5'
9959 3' -53.5 NC_002641.1 + 148515 0.72 0.769063
Target:  5'- gGCAguacaaggGGGUGGgGAAgcacCCCCCCGCCgCa -3'
miRNA:   3'- gCGU--------UCCAUUgUUUa---GGGGGGUGGgG- -5'
9959 3' -53.5 NC_002641.1 + 150929 0.71 0.823527
Target:  5'- --uGGGGUccugaaAACGAAUgCCCUCUACCCCg -3'
miRNA:   3'- gcgUUCCA------UUGUUUA-GGGGGGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.