miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9959 3' -53.5 NC_002641.1 + 5215 0.66 0.976348
Target:  5'- gCGCGuacucgggcccGGGgcGCAuuugucaguuuuuacAGUCcgccgcuaCCCCCGCCCCc -3'
miRNA:   3'- -GCGU-----------UCCauUGU---------------UUAG--------GGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 5318 0.68 0.917824
Target:  5'- uGCAgauAGGgcACcccauccgCCCCCCuCCCCu -3'
miRNA:   3'- gCGU---UCCauUGuuua----GGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 10607 0.66 0.963451
Target:  5'- --gGAGGaGAgGGggCCUCCCAUCCCa -3'
miRNA:   3'- gcgUUCCaUUgUUuaGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 12776 0.66 0.975081
Target:  5'- aCGCGuccgaugGGGUcguAGCGAAUCCagaauauaCCCACUUCg -3'
miRNA:   3'- -GCGU-------UCCA---UUGUUUAGGg-------GGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 22648 0.66 0.969513
Target:  5'- -aCAAGGUAGCGuuccaaAAUCCgCguuacgaaauucgCCGCCCCa -3'
miRNA:   3'- gcGUUCCAUUGU------UUAGGgG-------------GGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 24486 0.71 0.80599
Target:  5'- aGguAGGUGACAAAUCCagCUAUUCCg -3'
miRNA:   3'- gCguUCCAUUGUUUAGGggGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 35134 0.7 0.840354
Target:  5'- aGCcgauGAGGUAA-AGAUCCCCCgauCACCCg -3'
miRNA:   3'- gCG----UUCCAUUgUUUAGGGGG---GUGGGg -5'
9959 3' -53.5 NC_002641.1 + 39457 0.67 0.952248
Target:  5'- uGCAAcGGcAACA--UUCCCCUGCCUCu -3'
miRNA:   3'- gCGUU-CCaUUGUuuAGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 56331 0.67 0.952248
Target:  5'- uCGUc-GGgcGCGGcuGUCCUCCC-CCCCa -3'
miRNA:   3'- -GCGuuCCauUGUU--UAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 58568 0.68 0.923469
Target:  5'- gGCGAGGaaaaauugUGcCAAAUCUCCaaACCCCg -3'
miRNA:   3'- gCGUUCC--------AUuGUUUAGGGGggUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 64073 0.73 0.720181
Target:  5'- uGCAAGGUAGCAug-CCgUuugCUACCCCa -3'
miRNA:   3'- gCGUUCCAUUGUuuaGGgG---GGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 66298 0.68 0.938944
Target:  5'- uCGCAgaacAGGUGuuuAUAAAUagCUUCCGCCCCg -3'
miRNA:   3'- -GCGU----UCCAU---UGUUUAg-GGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 70391 0.73 0.710136
Target:  5'- uCGCAucguGGaAACAGAuacUUCCCCaCACCCCc -3'
miRNA:   3'- -GCGUu---CCaUUGUUU---AGGGGG-GUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 76759 0.73 0.730149
Target:  5'- uCGC-GGGcGACAuucCCCCaCCACCCCc -3'
miRNA:   3'- -GCGuUCCaUUGUuuaGGGG-GGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 80591 0.68 0.917824
Target:  5'- uGCGAGuGaAACA--UCCCCCguCCCUa -3'
miRNA:   3'- gCGUUC-CaUUGUuuAGGGGGguGGGG- -5'
9959 3' -53.5 NC_002641.1 + 86397 0.66 0.966738
Target:  5'- aGCAAGGUGACAAGUgCCggggaaCUGCuuagaCCCa -3'
miRNA:   3'- gCGUUCCAUUGUUUAgGGg-----GGUG-----GGG- -5'
9959 3' -53.5 NC_002641.1 + 89127 0.77 0.487067
Target:  5'- uCGCAAGGUGAUAAucgaaUCCUCgACCCCa -3'
miRNA:   3'- -GCGUUCCAUUGUUua---GGGGGgUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 97449 0.69 0.892834
Target:  5'- gCGCGAGGg----GAUCCCCCCAUg-- -3'
miRNA:   3'- -GCGUUCCauuguUUAGGGGGGUGggg -5'
9959 3' -53.5 NC_002641.1 + 101938 0.72 0.778504
Target:  5'- uGCAAGuGUGuaucGCuguAUCUCCCCuCCCCa -3'
miRNA:   3'- gCGUUC-CAU----UGuu-UAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 104925 0.68 0.923469
Target:  5'- gCGCGuucGUAAUuucauGUCCgCCCCGCCCa -3'
miRNA:   3'- -GCGUuc-CAUUGuu---UAGG-GGGGUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.