miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9959 3' -53.5 NC_002641.1 + 134075 1.11 0.003798
Target:  5'- gCGCAAGGUAACAAAUCCCCCCACCCCc -3'
miRNA:   3'- -GCGUUCCAUUGUUUAGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 148397 1.11 0.003798
Target:  5'- gCGCAAGGUAACAAAUCCCCCCACCCCc -3'
miRNA:   3'- -GCGUUCCAUUGUUUAGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 89127 0.77 0.487067
Target:  5'- uCGCAAGGUGAUAAucgaaUCCUCgACCCCa -3'
miRNA:   3'- -GCGUUCCAUUGUUua---GGGGGgUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 143734 0.75 0.60747
Target:  5'- gGCGAGGacUGGgGGgcGUUCCCCCACUCCg -3'
miRNA:   3'- gCGUUCC--AUUgUU--UAGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 70391 0.73 0.710136
Target:  5'- uCGCAucguGGaAACAGAuacUUCCCCaCACCCCc -3'
miRNA:   3'- -GCGUu---CCaUUGUUU---AGGGGG-GUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 64073 0.73 0.720181
Target:  5'- uGCAAGGUAGCAug-CCgUuugCUACCCCa -3'
miRNA:   3'- gCGUUCCAUUGUuuaGGgG---GGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 76759 0.73 0.730149
Target:  5'- uCGC-GGGcGACAuucCCCCaCCACCCCc -3'
miRNA:   3'- -GCGuUCCaUUGUuuaGGGG-GGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 133958 0.72 0.769063
Target:  5'- gGCAguacaaggGGGUGGgGAAgcacCCCCCCGCCgCa -3'
miRNA:   3'- gCGU--------UCCAUUgUUUa---GGGGGGUGGgG- -5'
9959 3' -53.5 NC_002641.1 + 148515 0.72 0.769063
Target:  5'- gGCAguacaaggGGGUGGgGAAgcacCCCCCCGCCgCa -3'
miRNA:   3'- gCGU--------UCCAUUgUUUa---GGGGGGUGGgG- -5'
9959 3' -53.5 NC_002641.1 + 101938 0.72 0.778504
Target:  5'- uGCAAGuGUGuaucGCuguAUCUCCCCuCCCCa -3'
miRNA:   3'- gCGUUC-CAU----UGuu-UAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 24486 0.71 0.80599
Target:  5'- aGguAGGUGACAAAUCCagCUAUUCCg -3'
miRNA:   3'- gCguUCCAUUGUUUAGGggGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 150929 0.71 0.823527
Target:  5'- --uGGGGUccugaaAACGAAUgCCCUCUACCCCg -3'
miRNA:   3'- gcgUUCCA------UUGUUUA-GGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 131543 0.71 0.823527
Target:  5'- --uGGGGUccugaaAACGAAUgCCCUCUACCCCg -3'
miRNA:   3'- gcgUUCCA------UUGUUUA-GGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 35134 0.7 0.840354
Target:  5'- aGCcgauGAGGUAA-AGAUCCCCCgauCACCCg -3'
miRNA:   3'- gCG----UUCCAUUgUUUAGGGGG---GUGGGg -5'
9959 3' -53.5 NC_002641.1 + 148392 0.7 0.871641
Target:  5'- uGCGAGGgu-----UCUCCCCcCCCCa -3'
miRNA:   3'- gCGUUCCauuguuuAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 134081 0.7 0.871641
Target:  5'- uGCGAGGgu-----UCUCCCCcCCCCa -3'
miRNA:   3'- gCGUUCCauuguuuAGGGGGGuGGGG- -5'
9959 3' -53.5 NC_002641.1 + 97449 0.69 0.892834
Target:  5'- gCGCGAGGg----GAUCCCCCCAUg-- -3'
miRNA:   3'- -GCGUUCCauuguUUAGGGGGGUGggg -5'
9959 3' -53.5 NC_002641.1 + 140282 0.69 0.90518
Target:  5'- uGCAGGGgcuugguauCGAGUCCacaugcaCCCCACCUa -3'
miRNA:   3'- gCGUUCCauu------GUUUAGG-------GGGGUGGGg -5'
9959 3' -53.5 NC_002641.1 + 149303 0.68 0.911936
Target:  5'- cCGCAGGGaUGGCA--UCCCCuucagaauaugaCCAuguCCCCg -3'
miRNA:   3'- -GCGUUCC-AUUGUuuAGGGG------------GGU---GGGG- -5'
9959 3' -53.5 NC_002641.1 + 133170 0.68 0.911936
Target:  5'- cCGCAGGGaUGGCA--UCCCCuucagaauaugaCCAuguCCCCg -3'
miRNA:   3'- -GCGUUCC-AUUGUuuAGGGG------------GGU---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.