miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9987 3' -52.1 NC_002654.1 + 75102 0.66 0.980615
Target:  5'- cAGUGgACguUCGGCGACGCaCACUuuACu -3'
miRNA:   3'- -UCAC-UGguAGUUGCUGCG-GUGGu-UGu -5'
9987 3' -52.1 NC_002654.1 + 35962 0.66 0.980615
Target:  5'- cGUGAUCGgucCGACGgcuACGCCACUGAa- -3'
miRNA:   3'- uCACUGGUa--GUUGC---UGCGGUGGUUgu -5'
9987 3' -52.1 NC_002654.1 + 95221 0.66 0.978311
Target:  5'- --aGaACCAUgaggaAACGuuGCCACCAACAg -3'
miRNA:   3'- ucaC-UGGUAg----UUGCugCGGUGGUUGU- -5'
9987 3' -52.1 NC_002654.1 + 14866 0.66 0.97581
Target:  5'- gAGUca-CAUUAugGAUGCCGCgAACAu -3'
miRNA:   3'- -UCAcugGUAGUugCUGCGGUGgUUGU- -5'
9987 3' -52.1 NC_002654.1 + 119787 0.66 0.97581
Target:  5'- uGUGACCGUCAACaacaagaguCGCUACacaGAUAa -3'
miRNA:   3'- uCACUGGUAGUUGcu-------GCGGUGg--UUGU- -5'
9987 3' -52.1 NC_002654.1 + 21794 0.66 0.973105
Target:  5'- cGUGGCCAgCGACGGCacuacaccuuugGCCAgaGACAg -3'
miRNA:   3'- uCACUGGUaGUUGCUG------------CGGUggUUGU- -5'
9987 3' -52.1 NC_002654.1 + 10309 0.66 0.96705
Target:  5'- --cGACUguaGUCGACGACGCCAUa---- -3'
miRNA:   3'- ucaCUGG---UAGUUGCUGCGGUGguugu -5'
9987 3' -52.1 NC_002654.1 + 17051 0.66 0.96705
Target:  5'- cGUGGuCCAagAAUGGCGUaGCCAACGc -3'
miRNA:   3'- uCACU-GGUagUUGCUGCGgUGGUUGU- -5'
9987 3' -52.1 NC_002654.1 + 36237 0.67 0.963686
Target:  5'- cGUGGCCGUgGACGcuuUGCuCGCgCAACGa -3'
miRNA:   3'- uCACUGGUAgUUGCu--GCG-GUG-GUUGU- -5'
9987 3' -52.1 NC_002654.1 + 45693 0.67 0.956254
Target:  5'- cAG-GACaauUCAACGACGUCAUCGAa- -3'
miRNA:   3'- -UCaCUGgu-AGUUGCUGCGGUGGUUgu -5'
9987 3' -52.1 NC_002654.1 + 85789 0.67 0.952176
Target:  5'- uGUGAUaaguUCAACGAuCGUCACCAuguCAg -3'
miRNA:   3'- uCACUGgu--AGUUGCU-GCGGUGGUu--GU- -5'
9987 3' -52.1 NC_002654.1 + 17001 0.68 0.943273
Target:  5'- --cGACCGUCGcCGGuguUGCCACCGAa- -3'
miRNA:   3'- ucaCUGGUAGUuGCU---GCGGUGGUUgu -5'
9987 3' -52.1 NC_002654.1 + 113278 0.68 0.943273
Target:  5'- cAGUuuuaaauCCAUUAAgGACGUCAUCAACAg -3'
miRNA:   3'- -UCAcu-----GGUAGUUgCUGCGGUGGUUGU- -5'
9987 3' -52.1 NC_002654.1 + 32589 0.68 0.922406
Target:  5'- gGGUG-UCAUgAACGACGCCAaaGACc -3'
miRNA:   3'- -UCACuGGUAgUUGCUGCGGUggUUGu -5'
9987 3' -52.1 NC_002654.1 + 48670 0.69 0.910429
Target:  5'- uGGUGaAUCAUCgGGCGugGCCGCaAACGc -3'
miRNA:   3'- -UCAC-UGGUAG-UUGCugCGGUGgUUGU- -5'
9987 3' -52.1 NC_002654.1 + 59150 0.69 0.906636
Target:  5'- --cGACaaCAUCGGCGGgucucacgccgucuuCGCCGCCGACAc -3'
miRNA:   3'- ucaCUG--GUAGUUGCU---------------GCGGUGGUUGU- -5'
9987 3' -52.1 NC_002654.1 + 60943 0.69 0.904057
Target:  5'- cGGUGACCucggGUCGcaaACGuaACGCCGCCGGa- -3'
miRNA:   3'- -UCACUGG----UAGU---UGC--UGCGGUGGUUgu -5'
9987 3' -52.1 NC_002654.1 + 46484 0.69 0.890559
Target:  5'- uGUGGCgAUagCAGuCGACGCCAUgGACAu -3'
miRNA:   3'- uCACUGgUA--GUU-GCUGCGGUGgUUGU- -5'
9987 3' -52.1 NC_002654.1 + 74946 0.7 0.868488
Target:  5'- aAGUGugCGUCGcCGaACGuCCACUGACGu -3'
miRNA:   3'- -UCACugGUAGUuGC-UGC-GGUGGUUGU- -5'
9987 3' -52.1 NC_002654.1 + 115216 0.72 0.79072
Target:  5'- cGUGA-CAUUAACGACGCCGUCAAUc -3'
miRNA:   3'- uCACUgGUAGUUGCUGCGGUGGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.