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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33282 | + | 42955 | 87 | 20.5 | -21.7 | ebv-mir-BHRF1-3 | 5' arm | ||
| 33485 | - | 32892 | 89 | 20 | -24 | 5' arm 3' arm | |||
| 33604 | - | 148287 | 87 | 22 | -24.8 | 5' arm 3' arm | |||
| 33602 | - | 146510 | 86 | 24 | -29.8 | 5' arm 3' arm | |||
| 33603 | - | 147393 | 90 | 24 | -21.7 | 5' arm 3' arm | |||
| 33625 | - | 170009 | 88 | 19 | -24 | 5' arm 3' arm | |||
| 33628 | - | 170547 | 88 | 19 | -24 | 5' arm 3' arm | |||
| 33624 | - | 169729 | 89 | 20 | -29.1 | 5' arm 3' arm | |||
| 33630 | - | 171070 | 88 | 19 | -24 | 5' arm 3' arm | |||
| 33633 | - | 171608 | 88 | 19 | -24 | 5' arm 3' arm | |||
| 33493 | - | 41114 | 89 | 20 | -22.4 | 5' arm 3' arm | |||
| 33595 | - | 139748 | 87 | 23.5 | -22.7 | 5' arm 3' arm | |||
| 33480 | - | 30814 | 86 | 20.5 | -26.7 | 5' arm 3' arm | |||
| 33479 | - | 30465 | 88 | 20.5 | -19.7 | 5' arm 3' arm | |||
| 33494 | - | 41546 | 84 | 20.5 | -29.6 | 5' arm 3' arm | |||
| 33476 | - | 29323 | 89 | 19 | -24.1 | 5' arm 3' arm | |||
| 33488 | - | 33886 | 86 | 20.5 | -26.7 | 5' arm 3' arm | |||
| 33477 | - | 29820 | 89 | 20 | -24 | 5' arm 3' arm | |||
| 33556 | - | 105205 | 89 | 23 | -29.2 | 5' arm 3' arm | |||
| 33461 | - | 23179 | 89 | 19 | -24.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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