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| GenBank Identifier | RefSeq Acc. | Name |
| 9628002 | NC_001650.1 | Equid herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3593 | + | 18118 | 82 | 23 | -28 | 5' arm 3' arm | |||
| 3808 | + | 170970 | 89 | 25 | -21.2 | 5' arm 3' arm | |||
| 3804 | + | 163448 | 90 | 23 | -34.6 | 5' arm 3' arm | |||
| 3805 | + | 166276 | 89 | 19 | -19.6 | 5' arm 3' arm | |||
| 3802 | + | 161948 | 78 | 31 | -34.5 | 5' arm 3' arm | |||
| 3786 | + | 149017 | 81 | 19 | -25.5 | 5' arm 3' arm | |||
| 3792 | + | 151869 | 89 | 21.5 | -25.6 | 5' arm 3' arm | |||
| 3788 | + | 150572 | 88 | 25.5 | -26.6 | 5' arm 3' arm | |||
| 3791 | + | 151528 | 90 | 24 | -19.8 | 5' arm 3' arm | |||
| 3787 | + | 150485 | 83 | 25.5 | -22.5 | 5' arm 3' arm | |||
| 3817 | + | 174805 | 90 | 21.5 | -27.7 | 5' arm 3' arm | |||
| 3810 | + | 171520 | 86 | 22.5 | -31.4 | 5' arm 3' arm | |||
| 3825 | - | 330 | 89 | 21.5 | -22.8 | 5' arm 3' arm | |||
| 3594 | + | 18711 | 77 | 21 | -20.3 | 5' arm 3' arm | |||
| 3807 | + | 170792 | 88 | 22.5 | -24.8 | 5' arm 3' arm | |||
| 3806 | + | 170098 | 90 | 20 | -23.1 | 5' arm 3' arm | |||
| 3809 | + | 171089 | 81 | 19 | -25.9 | 5' arm 3' arm | |||
| 3819 | + | 175903 | 88 | 27 | -31 | 5' arm 3' arm | |||
| 3811 | + | 171900 | 86 | 23.5 | -23.5 | 5' arm 3' arm | |||
| 3813 | + | 173161 | 88 | 23.5 | -26.3 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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