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| GenBank Identifier | RefSeq Acc. | Name |
| 9628002 | NC_001650.1 | Equid herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3587 | + | 9029 | 88 | 27 | -31 | 5' arm 3' arm | |||
| 3577 | + | 4215 | 81 | 19 | -25.9 | 5' arm 3' arm | |||
| 3574 | + | 3224 | 90 | 20 | -23.1 | 5' arm 3' arm | |||
| 3578 | + | 4646 | 86 | 22.5 | -31.4 | 5' arm 3' arm | |||
| 3575 | + | 3918 | 88 | 22.5 | -24.8 | 5' arm 3' arm | |||
| 3589 | + | 12028 | 89 | 25 | -22.6 | 5' arm 3' arm | |||
| 3590 | + | 12212 | 87 | 25 | -19.4 | 5' arm 3' arm | |||
| 3785 | + | 147830 | 90 | 23 | -24.5 | 5' arm 3' arm | |||
| 3784 | + | 147074 | 90 | 24.5 | -26.2 | 5' arm 3' arm | |||
| 3779 | + | 141417 | 87 | 26.5 | -20.5 | 5' arm 3' arm | |||
| 3741 | + | 115664 | 86 | 20 | -26.4 | 5' arm 3' arm | |||
| 3708 | + | 89881 | 90 | 20 | -21.9 | 5' arm 3' arm | |||
| 3693 | + | 78798 | 85 | 20.5 | -24.89 | 5' arm 3' arm | |||
| 3594 | + | 18711 | 77 | 21 | -20.3 | 5' arm 3' arm | |||
| 3825 | - | 330 | 89 | 21.5 | -22.8 | 5' arm 3' arm | |||
| 3687 | + | 75969 | 89 | 22.5 | -20.9 | 5' arm 3' arm | |||
| 3593 | + | 18118 | 82 | 23 | -28 | 5' arm 3' arm | |||
| 3592 | + | 15600 | 89 | 23.5 | -24.3 | 5' arm 3' arm | |||
| 3591 | + | 13837 | 87 | 21 | -19.6 | 5' arm 3' arm | |||
| 3588 | + | 11109 | 89 | 23.5 | -19.9 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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