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| GenBank Identifier | RefSeq Acc. | Name |
| 9628002 | NC_001650.1 | Equid herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3847 | - | 15132 | 85 | 19.5 | -30.32 | 5' arm 3' arm | |||
| 4060 | - | 182006 | 85 | 19.5 | -30.32 | 5' arm 3' arm | |||
| 3764 | + | 126649 | 90 | 21.5 | -30.3 | NP_042661 | 5' arm 3' arm | ||
| 3725 | + | 95685 | 88 | 23 | -30.3 | NP_042642 | 5' arm 3' arm | ||
| 3881 | - | 41058 | 89 | 21 | -30 | 5' arm 3' arm | |||
| 3892 | - | 46077 | 88 | 23 | -29.9 | NP_042606 | 5' arm 3' arm | ||
| 3849 | - | 16378 | 86 | 20.5 | -29.8 | 5' arm 3' arm | |||
| 4062 | - | 183252 | 86 | 20.5 | -29.8 | 5' arm 3' arm | |||
| 3982 | - | 124668 | 89 | 21 | -29.8 | NP_042661 | 5' arm 3' arm | ||
| 3694 | + | 79009 | 89 | 24.5 | -29.8 | NP_042628 | 5' arm 3' arm | ||
| 3722 | + | 94486 | 86 | 23.5 | -29.53 | NP_042641 | 5' arm 3' arm | ||
| 4019 | - | 141893 | 90 | 27.5 | -29.4 | 5' arm 3' arm | |||
| 3955 | - | 102633 | 90 | 22.5 | -29.3 | NP_042647 | 5' arm 3' arm | ||
| 3795 | + | 152153 | 89 | 28.5 | -29.2 | 5' arm 3' arm | |||
| 4058 | - | 181230 | 88 | 25.5 | -29.1 | 5' arm 3' arm | |||
| 3677 | + | 66821 | 89 | 22.5 | -29.1 | NP_042619 | 5' arm 3' arm | ||
| 3845 | - | 14356 | 88 | 25.5 | -29.1 | 5' arm 3' arm | |||
| 3890 | - | 45359 | 84 | 20 | -29 | 5' arm 3' arm | |||
| 3916 | - | 73989 | 88 | 23.5 | -29 | NP_042621 | 5' arm 3' arm | ||
| 3710 | + | 90218 | 90 | 19 | -29 | NP_042638 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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